SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4069

Length: 1520 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4069

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor n=1 Tax=Lycoris longituba RepID=D6MKH0_9ASPA	-	-	9.99967e-42	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	transcription factor	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	76%
Blast2go	response to red light	GO:0010114	Biological Process	76%
Blast2go	positive regulation of anthocyanin metabolic process	GO:0031539	Biological Process	76%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	76%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	76%
Blast2go	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	76%
Blast2go	response to far red light	GO:0010218	Biological Process	76%
Blast2go	red or far-red light signaling pathway	GO:0010017	Biological Process	76%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Basic-leucine zipper domain	IPR004827	-	0.0	76%
Blast2go	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI7

Fln msg:

Fln protein: MQDTAASTSTQHQSTSEKSSSSAAPAPFRQAKDAIESDDDIRRVPEMGGMQAGPSTCVPMRLDNPQPSTGVVAHRKRGRAPADKEHKRLKRLLRNRVSAQQARERKKAYLNDLEIRVKEIEHKNSELEERLSTLQNENHMLRQILKNTTMKKKGSGNSGAET*

Protein Length: 164

Fln nts: CGTCGTGACCTTGGTTGTTATTTAGTGTTGAAGTTGGTCAGCTCTGTGAAGGTTGGGCTGTGAACTGTGAAATCTATTAAAGTTCATGGATAGGTGATCTTAGAATTTGAAACGTAGTGTTCTGGATTGAGAGATCAGTTAAATATGGTTTGATGGGTGCAGTTGGAAGCACAGAGATCTGACGTGAAAATAGAGATCTGATTTGTTTAGTAAACCAATGGGTCTCCTGCAGCATTTGTGAAGAAGGTGAAGAGAGAGAGGTCTTTTTTACATCAACTGGTGACAGCCCTGGTGCTCTTATGAACACAACAGAAGCAGAGTTTTAGTAGTTGAGATTGGTGAAGAAAATATATGGGGAAGTTGGATATATTGTGAGTGTTAGTTGACGGGTGCTGCTCGCAAAAGAAGAGAGTTTCCGTGGCATTAATGCTTTTCAGGGACGGTTTGTATGAAATTTGAATAGAGGAATAACAGAGTTTGGGGATATATCAGA_-_ATGCAGGACACTGCTGCTTCCACATCTACACAACATCAGTCAACAAGTGAAAAATCTTCAAGTTCAGCGGCTCCAGCCCCATTTAGACAAGCCAAAGATGCAATTGAGAGCGATGATGATATCAGGAGGGTTCCTGAAATGGGAGGAATGCAAGCAGGTCCATCTACGTGTGTGCCTATGAGGTTAGACAATCCCCAACCTAGCACAGGCGTTGTTGCCCACAGGAAGAGAGGGAGAGCCCCTGCAGACAAGGAACACAAGCGTCTCAAAAGATTGCTTAGGAACAGAGTGTCTGCCCAACAGGCACGAGAAAGAAAGAAGGCATACTTAAATGATTTAGAAATAAGGGTCAAGGAGATTGAGCACAAGAACTCAGAGTTAGAGGAAAGGCTTTCCACTCTGCAGAATGAAAATCATATGCTTAGACAGATATTAAAGAATACAACAATGAAGAAAAAGGGATCTGGTAACTCAGGAGCAGAAACCTAA___GTTGTATAAGGATCTGGTAACTCAGGAGCAGAAAACTAAGTTGTATCAGGATCTGATAACTCAGAAGCAGAAACCTAAGTTGTATCAGGATCTGGCAACTCAGGAGCAAAAACCTAAATTGGAGCAGGGTACTGGATATGTATACTTATCTTAAGGTGCATTTATTATAGATTTGTGAGCACCCTATAGTGCGTGCTCTCTCCTCTCTGTCATTAGTGACATTTTCATGGGCCTTATTTCACACACAAGAGATTTTAACAGTCAACATAGATCACAAAGTTTTAGTTAGAACATTAGTAGTACATAATTAATAAACAATTTTACAACAGTTCCAGAGATATTATTCTCTGGTTTTAGAGATCAAGAAGAAAGACTAGTATGAGGATGTCCTGGTACACTTATAATCATTTGTTTTAACCTCGCTGCCTCTGTCCATATGAACTTCACTTAAAAGATGATCAGTAAAGCTGAGATTATTTCATGTGTCTTCCAGAGTTTATTGTGGAATTATCAGCTTGTTTTAGGCTGTAATGAGAAT

Fln Alignment:

sp_v1.1_unigene4069___PAPFRQAKDAIESDDDIRRVPEMGGMQAGPSTCVPMRLDNPQPSTGVVAHRKRGRAPADKEHKRLKRLLRNRVSAQQARERKKAYLNDLEIRVKEIEHKNSELEERLSTLQNENHMLRQILKNTTMKKKGSGNSGAET
A9NTI7______________PAQFRLAKDAIESDDDIRRVPEMGGMQAGPSTCLPMRLDNPQPTTGVVAHKKRGRAPADKEHKRLKRLLRNRVSAQQARERKKAYLSDLETRVKEIEHKNSELEERLSTLQNENQMLRQILKNTTMKKKGSGNSGAET

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
538		12		87	0.992554
776	33	66			0.997452
778			33	66	0.997452
779	66		33		0.997452
1014		25	75		0.996473
1015	75			25	0.996473
1016		25	75		0.996473
1017	25	75			0.996473
1044	75		25		0.996473
1084		75		25	0.996473
1133		33	66		0.997452
1215	70			30	1.0
1221	30	70			1.0
1264	25		75		1.0
1267	28		71		1.0
1279	66		33		1.0
1414		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain