SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4064

Length: 1676 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein	-	-	4.0e-38	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	68%
Blast2go	Heat shock protein DnaJ	IPR003095	-	68%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG3

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 95

Fln protein: PFYSHVGHFSHRHNVNVGVMKVGEIYVYFWELSMGISYHFSDCIILTYDYRYEYFASMEQVHYYLLLWERVCASIG*

Protein Length: 78

Fln nts: AGCAAAGCAAGCCAACCAGGGAGATTGGGAAGCTCGAGCACTAGGGCACAAGATCTTAGACAAGCTCGTGAACGACTTGCCAAAGCAGAAGAAGAAATGAAAAGAGAAATTCCTTTGGATCATTATTTGATCTTGGGTGTTGAGGCTTCCAGTACTGCAGCTGAGATCAAGAAGGCTTATCGGAAAGCTGCTCTCAGACACCATCCAGATAAGGCTGGGCAGTTTTCAGTACGAAGTGACAGTAGGGATGATGGCTATTGGAATGAAGTTGGGGAGGAGGTCCGTAGAGATGCAGAGAGGCTTTTCAAAATGATTGGAGAAGCATATGCAATTCTTTCAGACCCTGGCAAGCGGATGCGCTATGATGCTGAAGAAGAAGTGAGGAAACTTCGGCCAAGAGGAAGCAGCAGCGGGTCTGAGACTCCGTCAGAGGCATACCATTACCAATATGAGAAAGGCAGTAGGCGACAGCGAGATCGATGGGACTCGTGGAACGGATATGCCCAATATCAGCGCTGGCAGAATGGTCCAGATGCCGCTCAACCTGACACATATGCTCGCCGAAGTTCAAACAACTCAAGATTTAGTGATGGATCTAGGTGGAATGATTGGGATTATTTCTGAAGCAAGATATCCAAACCCTGCCCTATTATTTTTCTGAAATCGAAAGTGATTGTTTTATTCAGTTGGGCATTTATTGTTGACACAATATTACCTTGTTTAGCATATTCAGGTGACTTCCTCTGCTTTGGTGGGATTGTACATGTGCCTGAGATATCACAGTCGAAGATTTAAAATCCCTGTCATTCTACGCTAATCTTTTCTACCTGCCCTATCAAGTGATAGATAAAGGTGGAAGATTTTGATTTTTGAGCTTGTTGACCATAGAAGGAACTGATGGTCCTCTGTATTATGAAGAGATTTGACTTAGCGCAATCTTCATGCCTTGATCTACATGGATGAGTGTGGATTTACCAAGATTATTGTGCTTAAGATAATTTGGGAAAAGGTATTGGTAGCAGATTTTAAATCTACATGGATGAGTGTTGATTTACCAAGATAATTGTGCTTAAAAGTTTGGGAAAAGGCTCTCTTGTATTGGTGGTAGAATTTAGATATTGTAATATGCATGGCCCATGCTTGTTTTTAAAAAGCCTACAATCATGTAAATTGAATTCTGTGGGAAGCATCGGGTCTTATTGCGATAAGAGTAGTTAATTTTGTAACCCTTTTACTCCCATGTGGGACATTTCTCTCACCGTCACAACGTGAATGTGGGTGTGATGAAGGTAGGCGAGATATATGTTTATTTTTGGGAACTGTCGATGGGTATATCATACCACTTTTCTGACTGTATAATTCTTACTTATGATTACAGATATGAATATTTTGCTTCCATGGAACAAGTTCATTATTACTTGTTGCTATGGGAGAGAGTTTGTGCTTCTATTGGATAA___GCTCTTTTATTATTTACGAGAATCATGGTTTCGGTTGAGGAGTTAGTTATTATTTGTGTTGTACAAACTCCTTAGGTTGTGCTGCTCAAATTTATGAGCTCTGTGGTTCAGTGTGATGGATGGGGATCATACTCCACATTGTGGGTTGTAAAATACATTCTCAATCGCTTGTTATATTATTTAATCTGAATGTGGTACATTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene4064___PFYSHVGHFSHRHNVNVGVMKVGEIYVYFWELSMGISYHFSDCIILTYDYR-YEYFASMEQVHYYLLLWER
D5ACG3______________PLHPYVIFLSPSH-VNVGVMKVHEIYI-FWELSIVISYYFSVCIIVTYDYTDMNICFHGKQVHYYLLQWEK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
960		85	14		0.993533
961	85		14		0.993533
962			14	85	0.993533
1272	75		25		1.0
1290		10		90	0.90298
1291		10	90		0.90298
1292	90			10	0.90298
1293	90			10	0.90298
1296		10		90	0.90298
1297	90			10	0.90298
1299			90	10	0.90298
1301		10	90		0.90298
1302	90			10	0.90298
1303		10	90		0.90298
1453	16			83	0.994512
1455		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain