SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4057

Length: 1118 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4057

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Syntaxin-like protein n=3 Tax=core eudicotyledons RepID=Q3HRZ4_SOLTU	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	syntaxin related protein am3p	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell shape during vegetative growth phase	GO:0000903	Biological Process	85%
Blast2go	stomatal movement	GO:0010118	Biological Process	85%
Blast2go	amyloplast organization	GO:0009660	Biological Process	85%
Blast2go	negative gravitropism	GO:0009959	Biological Process	85%
Blast2go	vacuole organization	GO:0007033	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Target SNARE coiled-coil domain	IPR000727	-	85%
Blast2go	Syntaxin, N-terminal	IPR006011	-	85%
Blast2go	Syntaxin/epimorphin, conserved site	IPR006012	-	85%
Blast2go	t-SNARE	IPR010989	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEE4

Fln msg: your sequence is shorter than subject: 256 - 294

Fln protein: VVTSAVTQQAVAGGIFQINTAVSSFKRLLNDLGTSRDTPQLREKLHKTRQHIGQLVKETSARLKEASETDQHQEVSASKKVADAKLAKDFQAILKEYQKAQQLAAEREMAYTPFVPQVAESSGYSSTVPDLSSEVNQEQQLLIESRKQEFVLLENEVSFNEAIIEERDQGIKEIQNQISEVNEIFKDLAVLVNEQGIVIDDIGSNIESSYAATAEAKTQLAKASKSQKSRKCLSCWVPLAILGVVIIIVVIVLVL*

Protein Length: 257

Fln nts: CGTCGTGACCTCGGCTGTCACTCAGCAGGCAGTAGCAGGCGGCATCTTCCAAATTAACACCGCTGTTTCATCTTTCAAGCGCCTTCTCAACGATCTGGGCACCTCGAGAGACACTCCACAGCTCCGCGAGAAGTTGCATAAGACTAGGCAGCATATTGGGCAACTAGTGAAAGAGACTTCTGCTCGACTCAAAGAAGCCAGTGAAACAGATCAGCACCAAGAGGTTTCTGCAAGTAAAAAGGTTGCTGATGCAAAACTTGCTAAAGATTTCCAGGCTATACTAAAAGAGTATCAGAAGGCCCAACAACTTGCTGCTGAGCGTGAGATGGCTTACACACCTTTTGTTCCTCAAGTGGCTGAGTCTTCAGGTTACTCTTCAACTGTGCCTGATTTGAGTTCAGAAGTAAATCAGGAGCAGCAGCTTCTCATAGAATCAAGAAAACAGGAATTCGTCCTATTAGAAAATGAAGTATCCTTCAATGAAGCCATCATCGAAGAAAGAGATCAAGGAATAAAGGAAATTCAGAACCAAATTTCAGAAGTTAATGAGATTTTTAAGGATCTTGCTGTACTAGTTAATGAGCAAGGCATCGTGATTGATGACATCGGTTCTAATATTGAGAGTTCATATGCTGCCACTGCTGAAGCTAAAACCCAACTTGCTAAAGCATCCAAAAGTCAGAAGTCTAGAAAATGCCTGAGTTGCTGGGTACCATTGGCAATTTTAGGTGTGGTGATAATCATTGTCGTCATAGTCCTTGTTTTATAA___TTGACCACGTGTTCTTCAACGACGATGAATCATGCCTCACCAAAGTTTATCTCTGTTTCTGGGCAGCTAGATTTGCTTTATCTCTGATTCTGGGCTGGATGGATTTTGGCTATTTGCTACTTTATAGGCCGTTTTTTGATGTTCTATAGCAAATTAGTTACATAAATTACTGTTGGCGTGGAGGTGTGGGTACAAACCTGATCATTTTTGATGTAGTATCTTGGAGTTCTGGTAAGGTTTTTGAGAGGTCTTAAGGTCTTTTCATGTGGTACTACGCTTGGGCTTTAACTATTCATTCATTCGTTGAAGTTGTCTGATATTTGAGAGTACAGGCTTTTGCATGCTTTTC

Fln Alignment:

sp_v1.1_unigene4057___GGIFQINTAVSSFKRLLNDLGTSRDTPQLREKLHKTRQHIGQLVKETSARLKEASETDQHQEVSASKKVADAKLAKDFQAILKEYQKAQQLAAEREMAYTPFVPQVAESSGYSSTVPDLSSEVNQEQQLLIESRKQEFVLLENEVSFNEAIIEERDQGIKEIQNQISEVNEIFKDLAVLVNEQGIVIDDIGSNIESSYAATAEAKTQLAKASKSQKSRKCLSCW
D5AEE4______________GGIFQINTAVSSFKRLLNDLGTSRDTPQLREKLHKTRQHIGQLVKETSARLKEASETDQHQEVSASKKIADAKLAKDFQAILKEYQKAQQLAADRETAYTPFVSQVAESSSYSSNVPDSSAEVNQEQQFLIQTRKQEFFQLENEVSFNEAIIEERDQGIKEIQNQISEVNEIFKDLAVLVNEQGIVIEDIGSNIETSNSATAEATTHLVKASKSQKSRKCLSCW

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
521	75		25		0.996473
621	85	14			0.993533
623	85	14			0.993533
626	14			85	0.993533
628	85	14			0.993533
630	85			14	0.993533
631			14	85	0.993533
636		85		14	0.993533
641			85	14	0.993533
678		16	83		0.999991
708	6	13	80		0.999961
710			86	13	0.999973
711			13	86	0.999973
721	86			13	0.999973
722	86		13		0.999973
724		15		84	0.999986
726		15		84	0.999986
733		17	82		1.0
736		11	88		0.999952
737	88		11		0.999952
739	82	5	11		0.999919
743	82	11	5		0.999919
747			11	88	0.999952
791	88			11	0.999937
799		11		88	0.999937
801	88			11	0.999937
813	78	5		15	1.0
814		15	84		1.0
815	15			84	1.0
817		11		88	0.999937
858		10		90	1.0
861			90	10	1.0
867		10	90		1.0
870		10	90		1.0
871	10		90		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain