SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4047

Length: 939 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4047

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease adaptor protein clpS, putative; K06891 ATP-dependent Clp protease adaptor protein ClpS	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	atp-dependent clp protease adaptor protein containing protein	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Adaptor protein ClpS, core	IPR003769	-	82%
Blast2go	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	IPR014719	-	82%
Blast2go	ATP-dependent Clp protease adaptor protein ClpS	IPR022935	-	82%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
90		75		25	0.996473
138	80			20	0.995493
139		80	20		0.995493
140	80		20		0.995493
141			20	80	0.995493
152	80		20		0.995493
238	25			75	0.996473
242			25	75	0.996473
243	75		25		0.996473
257	20			80	0.995493
262	80		20		0.995493
280			85	14	0.993533
281	85		14		0.993533
282	85		14		0.993533
283			14	85	0.993533
378	88	11			0.923564
381		11		88	0.923564
382			11	88	0.923564
386		11		88	0.923564
387		11	88		0.923564
388	88			11	0.923564
389	88			11	0.923564
394	88	11			0.923564
395	11			88	0.923564
838		60		40	1.0
840	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain