SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4042

Length: 396 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene4042
CCAGATTGCAGACTACATTCATTCTACTCATCCCCAGGAGAACTGCCTCTCACCGTTTGACTTTGGCGTCCATGATTTGTCTCTCTCCAGCAATGAAGGTTTTCAACAAAGTAGGAAGAAGCTGACAATGATGGAAATCCCCAGTATTTTTCTTCCAGAGGATTGGTCTTTCACTTTTTTCGAAGGCATAAATAGGTATCCTGACTCTATGTTTAGGGACAGGACAGTGGCTGAGCTAGGGTGTGGTAATGGATGGATATCCATTGCTTTAGCTGAAAAGTGGTCTCCCCTCAAGGTATATGGTCTTGATATAAATCCTAGAGCTGTCAAGATTGCCAAGATAAACTTATATCTTAATTCCTTGGATGGGAATGGATTTCCAATTTATGATGATGA

Ace file of the UniGene sp_v1.1_unigene4042

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cl1511_1, MMT, MMT1; LOC541786 (EC:2.1.1.12)	-	-	75%
FL-Next	sp=Methionine S-methyltransferase; Zea mays (Maize).	-	-	75%
Blast2go	methionine s-methyltransferase	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	S-adenosylmethionine metabolic process	GO:0046500	Biological Process	0.0	81%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyltransferase small	IPR007848	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W519

Fln msg: Distance to subject end: 908 aas, your sequence is shorter than subject: 131 - 1091

Fln protein: QIADYIHSTHPQENCLSPFDFGVHDLSLSSNEGFQQSRKKLTMMEIPSIFLPEDWSFTFFEGINRYPDSMFRDRTVAELGCGNGWISIALAEKWSPLKVYGLDINPRAVKIAKINLYLNSLDGNGFPIYDD

Protein Length: 132

Fln nts: CCAGATTGCAGACTACATTCATTCTACTCATCCCCAGGAGAACTGCCTCTCACCGTTTGACTTTGGCGTCCATGATTTGTCTCTCTCCAGCAATGAAGGTTTTCAACAAAGTAGGAAGAAGCTGACAATGATGGAAATCCCCAGTATTTTTCTTCCAGAGGATTGGTCTTTCACTTTTTTCGAAGGCATAAATAGGTATCCTGACTCTATGTTTAGGGACAGGACAGTGGCTGAGCTAGGGTGTGGTAATGGATGGATATCCATTGCTTTAGCTGAAAAGTGGTCTCCCCTCAAGGTATATGGTCTTGATATAAATCCTAGAGCTGTCAAGATTGCCAAGATAAACTTATATCTTAATTCCTTGGATGGGAATGGATTTCCAATTTATGATGATGA

Fln Alignment:

sp_v1.1_unigene4042___ENCLSPFDFGVHDLSLSSN-EGFQQSRKKLTMMEIPSIFLPEDWSFTFFEGINRYPDSMFRDRTVAELGCGNGWISIALAEKWSPLKVYGLDINPRAVKIAKINLYLNSLDGNGFPIYD
Q8W519______________EDCFRTFHFRIHDVVLDPHVQGFQQM-KKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIALAEKWCPSKVYGLDINPRAVKIAWINLYLNALDDDGLPIYD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
284		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain