SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4022

Length: 1859 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4022

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleobase ascorbate transporter	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	nucleobase ascorbate transporter	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: your sequence is shorter than subject: 370 - 524

Fln protein: PQIIVIVLFALHLRKISIFGNRVFQVYAVPLGLAITWAYAFLLTEIGVYNYKGCDMKAMGSHIKNERCQRHIYTMQHCRTDVSDVLKTSAWFRFPYPFQWGVPTFHFKTAAVMIVASIIATVDSVGTYHGISLLVASKAPTRNVVSRGIGLEGLTSLLAGLWGTGTGMTTLTENVHTVAVTKVGSRRAVEFGAYILIVLSFIGKVGGFVASIPQVIVAGLLCFIWTMLVALGLSNLRYSETGSSRNMIIVGLSLFLSLSIPSYFQQHVKGHNTQLQKQFQPYAIGENGPIQTGVHAINFFLNTVFSMHMVIAFIVALILDNTVPGSRQERGTYIWSRSGPARKEPAVVKDYGLPFGISRFFSWARWVGL*

Protein Length: 371

Fln nts: CCTCAAATTATTGTTATTGTTCTATTTGCACTGCATCTTCGGAAAATATCAATTTTTGGAAATCGAGTTTTTCAAGTTTATGCGGTTCCTTTAGGGCTTGCAATCACATGGGCATATGCATTTTTGCTTACGGAAATAGGAGTTTACAACTATAAGGGCTGTGACATGAAGGCAATGGGTTCTCATATTAAAAATGAGAGATGTCAGAGGCATATTTATACTATGCAGCATTGTCGGACGGATGTTTCCGATGTTCTCAAGACATCAGCATGGTTTAGATTCCCTTACCCTTTTCAGTGGGGTGTTCCGACTTTCCACTTCAAGACTGCAGCAGTGATGATAGTGGCATCTATCATTGCAACTGTTGATTCGGTTGGGACATATCATGGAATATCCCTTCTGGTGGCATCGAAGGCACCGACACGAAATGTTGTAAGTAGAGGAATTGGTCTGGAAGGCTTGACTAGCTTGTTGGCTGGTCTTTGGGGCACGGGCACAGGAATGACAACTCTCACGGAGAATGTGCATACAGTTGCTGTAACAAAGGTTGGGAGCCGTCGTGCTGTGGAGTTTGGGGCATACATTTTGATTGTTCTGTCATTCATTGGTAAGGTGGGAGGATTTGTTGCATCCATTCCACAAGTTATTGTTGCTGGGCTTTTATGTTTCATATGGACAATGCTTGTTGCTTTGGGTCTTTCAAACCTGAGATATAGTGAAACTGGAAGCTCGCGGAATATGATAATAGTGGGACTATCTTTATTCCTTTCTCTATCAATTCCTTCTTATTTTCAACAACATGTTAAAGGACATAACACCCAGTTACAAAAACAGTTCCAACCATATGCAATTGGGGAAAATGGTCCCATCCAAACTGGTGTGCATGCGATTAATTTCTTCCTAAATACGGTTTTCTCAATGCACATGGTCATTGCATTCATTGTAGCGTTGATTTTGGATAATACTGTTCCTGGCAGTCGACAGGAGAGGGGGACTTATATATGGTCTCGTTCAGGGCCTGCTAGGAAGGAGCCTGCTGTTGTAAAGGATTACGGTTTGCCATTTGGAATCTCAAGATTCTTTTCGTGGGCACGATGGGTAGGGCTATGA___GTAGTTTTCTGTAAAAAGCGAATGGAGGAAATTCTATTAGATTTGTAAAATGTTTGGAGCCAGATTTGAGTTTCTATCAGGTCCACCTTGATATAGTTGATTATATTTTATAATAATAGTGCTATCATTTTTTGGAAAAGAAGGGACTAGCCAGGGATACGGTTTCTGCCAAGGTGAACAGGCTGTGCTGAATCAGTGGAAGATCGTCTCAATTCTTTATGTTGTTCTGCAACAGAGTTGGCAGAAAAACATGGTGTTCATAATGAAGACAAATGTGCATCTTGACAAGTAAATACATCTACAAGTCTTTAAATCAGGATCTTTTATTGTTTGTTTCTAAAACCCTGAATCTTTTTGGATGTGATGCATTTACAGCATCTTCTCCAAACCCATTTATCTAGATGCTAACAGGAAATTTTATCTTGATGAATGGGATGGGCATATATCTCATAGTGGTAAGAGAATAGATGCCATTTTAGGTAAGAGAACTCAAGTCATATTAGGTAAGACCAACTCTCTACTGTATGCAAGACCAACTTTATACTATTATGTTGGAGCTTGTTCTGGAGCACTGACCCCACTTCCTCAATGGTTGCATCGTTAAACTTGACCCTCTGTACTTTTTGTCTAGTCGGCCAACATTATTTCACACAAACTTGGGTTCTTCTAGTGTCTACTGACCTGCTATTCTCATTCATGTGAGGACAACTGTTATTTTAGAGAAAACTGAGATTTGGTTGCACCATATG

Fln Alignment:

sp_v1.1_unigene4022___PQIIVIVLFALHLRKISIFGNRVFQVYAVPLGLAITWAYAFLLTEIGVYNYKGCDMKAMGSHIKNERCQRHIYTMQHCRTDVSDVLKTSAWFRFPYPFQWGVPTFHFKTAAVMIVASIIATVDSVGTYHGISLLVASKAPTRNVVSRGIGLEXXXXXXXXXXXXXXXXXXXXENVHTVAVTKVGSRRAVEFGAYILIVLSFIGKVGGFVASIPQVIVAGLLCFIWTMLVALGLSNLRYSETGSSRNMIIVGLSLFLSLSIPSYFQQHVKGHNTQLQKQFQPYAIGENGPIQTGVHAINFFLNTVFSMHMVIAFIVALILDNT--VPGSRQERGTYIWSRSGPARKEPAVVKDYGLPFGISRFF
B8LQ21______________PMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAYK-----------HVPER-------TKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFPIFAALYCVLFGLVAAVGISFIQFTNMNSMRNLFILGVSLFLGLSIPQYFNEF--------------YATSRVGPVHTNAGWFDDFLNTIFSSPPTVALIIAVFLDNTLEVEHSKKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
475		22	77		0.999999
476	22		77		0.999999
479		22	77		0.999999
480	22		77		0.999999
635		83	16		1.0
868		90	10		0.90298
869		90		10	0.90298
893		10		90	0.90298
895	90	10			0.90298
1036		90		10	0.90298
1037		90		10	0.90298
1086		44		55	1.0
1234	16		83		0.994512
1383		75	25		0.996473
1392	90		10		0.90298
1395			10	90	0.90298
1400	85			14	0.993533
1401	85			14	0.993533
1403			14	85	0.993533
1404	85	14			0.993533
1405	85			14	0.993533
1406	85		14		0.993533
1700		66		33	0.997452
1746		66		33	0.997452
1794	33	66			0.997452
1823	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain