SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4020

Length: 2781 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4020
AATGAATCATGGAATCTCGAATGGTGGAGTGCGTAAACTATAGCCTTCGTCTGTACATGTACAGCAATGCTATTTTTATTGGTGAACGGCTCTGCGCCGAATACCCTTCTGAGAAGAATTCTCAATTATTAGCAAGCTGTTACTTGCGTAACAATCAAGCTTATCGTGCATATAGCATATTAAAAGGGACACAATCTCCACAATCCCGTTATTTATTTGCACTGGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCATTATGTCCTCTCAATGAGCCTAGCACAGAGGTCCCAAATGGTGCAGCTGGACATTATCTCCTTGGAAAAATATACAGGTATACTGATCGAAGAAAAATTGCAATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCCCTTCTTTGGGCTGCATATGAAGAACTGTGCATCCTAGGTGCTGAAGAAGAAGCAGCTGAAATTTATGGTGATTCAGCTGTTTTCCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCTCAATATTTTCCATCAGCTGATGATCGTAATATGCCATCTAGCCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAATTACCTGTGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGCTTCAGGGGCTGGGAATATTACACTTCATAGTACACCGTTTTCAGTGAATATGTCAGCATACAACACCCCTTCTCCAGTTCCATCACAAATTGCTACAGCAGCTCCACCTCCTTTGAACAAGAAATGTACAAGGTCAGCAAAATTCTACTGTTACGGCTGGGGAGGTCTCACCAAGGTCAAATGTCAACGCTCCAGGTCAAGCACCAAGAAGGAAGTTTATGGATGAAGGCAAATTAAGAAAGAGCATCCGATCATCATCCACACGTGCTGCATACTCTCAGGTTTCAGGGAGGTTATTTTCTGAAAGTGGACCACGCCGAAGTACAAGGCTTTCAGGAGATGCAACGATACCAGTTGGCTCATCTGTGCTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTCCCTGGAGGTTTGTCTTCAACCAAAATGAATGCTTCGAGCTCTCTTCGCTCGGGCACTGTTCGCAAAGGGCATTCATCAGCTATAGAGAGTGGTTTTGAAGATGGTAAAAAATATGAAGCTTTGGAAGACTCTGGGCCAGAAGATACAGCAGCTAATTCTTCTCGGCGTGTTGGACAAGTTATAATGGATGATGAACCTCGTATTCGTAACAGATCAAGTGGTTTAATAGGTCGTGGTTCAAGGGTTGCAGAGGGTTCACTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAGAAGCATTCAGGCATTGTTGCATGCATCGATGCAAGGAGGCTCTACAGGTATTTTGTAAACTTCCACATCATCAATATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAGCGCGCCTTTAGTTGGGCTCGTCGTGTGTCTCCTTACTATCTAGAAGGAATGGATATCTACTCTACAGTTCTTTATCACATGAAGGAGGAGATGAAGTTGAGTTACTTGGCTCAGGAATTAAGTGCAATTGATCGTTTATCTCCTCAAGCTTGGTGCGCTTTGGGTAATTGTTATAGTTTGCAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGGGCCATACAGCTTGATTCACGTTTTACTTATGCCCATACACTCTGTGGTCATGAATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACCTGTTATCGAAGTGCACTGCGAATTGACCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATAAATCCTCGATCGTCTGTTCTAATGTGTTACCTTGGGATGGCTCTACATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATGCAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAGATATAACGATGCTTTAGAGGAGCTGGAGTTGCTAAAAGAAGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTTATTGGTAAAATTTACAAGCGCATAAATATGCCAGAACGTGCAATGTATCATTTTGGGCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATAGAGGATCATCTGTAGAAATTCTGTGATGCTGGACTATATATTTTGGGGCCAATCCCAACATCTATCAATCTGTTACTTCTGTAAGGAAGTTCAGGCTGTATTTGTAGGTTCGTCTATCAGTCTAATCCTGGGGAATTACTGGTATCCAGCACTAATATGATGTCTGTGCCACTTTTCACTGTGTCAGATGAACGAAGTGTACCATGTGAAGGATGAAGGCCACATTGGCTTTTATTGTTAACTAATATTATCCTGCTAAGAAACTTAGGGAACTCATGCTGTTTAGGTCATATGCGGGCTGTACAATACAGGAATGTAGAGGATTAACATGCTAAAATGCAATAGCCATGGCTTTATTCTCAATGGCCATGGCGTTAGAGGGATCTGTTATGGCAAGTTTTTTGTTTGGCCATGTATGCAACTGCACAGTGTAACTAATTTGGTTGTCTTAATTTATGATGA

Ace file of the UniGene sp_v1.1_unigene4020

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cell division cycle, putative; K03350 anaphase-promoting complex subunit 3	-	-	58%
FL-Next	sp=Cell division cycle protein 27 homolog B; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	gamete generation	GO:0007276	Biological Process	71%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	71%
Blast2go	regulation of cell division	GO:0051302	Biological Process	71%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	71%
Blast2go	root cap development	GO:0048829	Biological Process	71%
Blast2go	cell differentiation	GO:0030154	Biological Process	71%
Blast2go	root meristem specification	GO:0010071	Biological Process	71%
Blast2go	regulation of mitotic cell cycle	GO:0007346	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	cell plate	GO:0009504	Cellular Component	71%
Blast2go	spindle	GO:0005819	Cellular Component	71%
Blast2go	anaphase-promoting complex	GO:0005680	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	71%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	71%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	71%
Blast2go	Tetratricopeptide repeat	IPR019734	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LGU6

Fln msg: Separated hits, possible frame ERROR between 773 and 799, your sequence is longer than subject: 776 - 744

Fln protein: MESRMVECVNYSLRLYMYSNAIFIGERLCAEYPSEKNSQLLASCYLRNNQAYRAYSILKGTQSPQSRYLFALVCFDMGLLREAEAALCPLNEPSTEVPNGAAGHYLLGKIYRYTDRRKIAIEHFVQAVSLDPLLWAAYEELCILGAEEEAAEIYGDSAVFRLQQQHQLELSSQYFPSADDRNMPSSRSSYSNDASPRQARQLPVSSGGELPAGHASASGAGNITLHSTPFSVNMSAYNTPSPVPSQIATAAPPPxxxxxxxxxxNSTVTAGEVSPRSNVNAPGQAPRRKFMDEGKLRKSIRSSSTRAAYSQVSGRLFSESGPRRSTRLSGDATIPVGSSVLPVGGNGSGNSSAKLPGGLSSTKMNASSSLRSGTVRKGHSSAIESGFEDGKKYEALEDSGPEDTAANSSRRVGQVIMDDEPRIRNRSSGLIGRGSRVAEGSLELLGLLRVLGEAFRHCCMHRCKEALQVFCKLPHHQYATGWVLCQVGKTHFEMVDYYEAERAFSWARRVSPYYLEGMDIYSTVLYHMKEEMKLSYLAQELSAIDRLSPQAWCALGNCYSLQKDHETALKTFQRAIQLDSRFTYAHTLCGHEYVAMEEFENGITCYRSALRIDPRHYNAWYGLGMIYLRQEKYDFAEHHFRTAFLINPRSSVLMCYLGMALHALKRNEEALEMLDQAILADAKNPLPIYQKANVLVSNERYNDALEELELLKEVAPRESSVYSLIGKIYKRINMPERAMYHFGLALDLKPSTADVAIIKSAIEKLHVPDDIEDHL*

Protein Length: 777

Fln nts: AATGAATC_-_ATGGAATCTCGAATGGTGGAGTGCGTAAACTATAGCCTTCGTCTGTACATGTACAGCAATGCTATTTTTATTGGTGAACGGCTCTGCGCCGAATACCCTTCTGAGAAGAATTCTCAATTATTAGCAAGCTGTTACTTGCGTAACAATCAAGCTTATCGTGCATATAGCATATTAAAAGGGACACAATCTCCACAATCCCGTTATTTATTTGCACTGGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCATTATGTCCTCTCAATGAGCCTAGCACAGAGGTCCCAAATGGTGCAGCTGGACATTATCTCCTTGGAAAAATATACAGGTATACTGATCGAAGAAAAATTGCAATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCCCTTCTTTGGGCTGCATATGAAGAACTGTGCATCCTAGGTGCTGAAGAAGAAGCAGCTGAAATTTATGGTGATTCAGCTGTTTTCCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCTCAATATTTTCCATCAGCTGATGATCGTAATATGCCATCTAGCCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAATTACCTGTGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGCTTCAGGGGCTGGGAATATTACACTTCATAGTACACCGTTTTCAGTGAATATGTCAGCATACAACACCCCTTCTCCAGTTCCATCACAAATTGCTACAGCAGCTCCACCTCCTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxAAATTCTACTGTTACGGCTGGGGAGGTCTCACCAAGGTCAAATGTCAACGCTCCAGGTCAAGCACCAAGAAGGAAGTTTATGGATGAAGGCAAATTAAGAAAGAGCATCCGATCATCATCCACACGTGCTGCATACTCTCAGGTTTCAGGGAGGTTATTTTCTGAAAGTGGACCACGCCGAAGTACAAGGCTTTCAGGAGATGCAACGATACCAGTTGGCTCATCTGTGCTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTCCCTGGAGGTTTGTCTTCAACCAAAATGAATGCTTCGAGCTCTCTTCGCTCGGGCACTGTTCGCAAAGGGCATTCATCAGCTATAGAGAGTGGTTTTGAAGATGGTAAAAAATATGAAGCTTTGGAAGACTCTGGGCCAGAAGATACAGCAGCTAATTCTTCTCGGCGTGTTGGACAAGTTATAATGGATGATGAACCTCGTATTCGTAACAGATCAAGTGGTTTAATAGGTCGTGGTTCAAGGGTTGCAGAGGGTTCACTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAGAAGCATTCAGGCATTGTTGCATGCATCGATGCAAGGAGGCTCTACAGGTATTTTGTAAACTTCCACATCATCAATATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAGCGCGCCTTTAGTTGGGCTCGTCGTGTGTCTCCTTACTATCTAGAAGGAATGGATATCTACTCTACAGTTCTTTATCACATGAAGGAGGAGATGAAGTTGAGTTACTTGGCTCAGGAATTAAGTGCAATTGATCGTTTATCTCCTCAAGCTTGGTGCGCTTTGGGTAATTGTTATAGTTTGCAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGGGCCATACAGCTTGATTCACGTTTTACTTATGCCCATACACTCTGTGGTCATGAATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACCTGTTATCGAAGTGCACTGCGAATTGACCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATAAATCCTCGATCGTCTGTTCTAATGTGTTACCTTGGGATGGCTCTACATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATGCAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAGATATAACGATGCTTTAGAGGAGCTGGAGTTGCTAAAAGAAGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTTATTGGTAAAATTTACAAGCGCATAAATATGCCAGAACGTGCAATGTATCATTTTGGGCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATAGAGGATCATCTGTAG___AAATTCTGTGATGCTGGACTATATATTTTGGGGCCAATCCCAACATCTATCAATCTGTTACTTCTGTAAGGAAGTTCAGGCTGTATTTGTAGGTTCGTCTATCAGTCTAATCCTGGGGAATTACTGGTATCCAGCACTAATATGATGTCTGTGCCACTTTTCACTGTGTCAGATGAACGAAGTGTACCATGTGAAGGATGAAGGCCACATTGGCTTTTATTGTTAACTAATATTATCCTGCTAAGAAACTTAGGGAACTCATGCTGTTTAGGTCATATGCGGGCTGTACAATACAGGAATGTAGAGGATTAACATGCTAAAATGCAATAGCCATGGCTTTATTCTCAATGGCCATGGCGTTAGAGGGATCTGTTATGGCAAGTTTTTTGTTTGGCCATGTATGCAACTGCACAGTGTAACTAATTTGGTTGTCTTAATTTATGATGA

Fln Alignment:

sp_v1.1_unigene4020___MESRMVECVNYSLRLYMYSNAIFIGERLCAEYPSEKNSQLLASCYLRNNQAYRAYSILKGTQSPQSRYLFALVCFDMGLLREAEAALCPLNEPSTEVPNGAAGHYLLGKIYRYTDRRKIAIEHFVQAVSLDPLLWAAYEELCILGAEEEAAEIYGDSAVFRXXXXXXXXXXXXYFPSA--DDRNMPSSRSSYSNDASPRQARQLPVSSGGELPAGHASASGAGNITLHSTPFSV-NMSAYNTPSPVPSQIATAAPPPLxxxxxxxxxNSTVTAGEVSPRSNVNAPGQAPRRKFMDEGKLRKSIRSSSTRAAYSQVSGRLFSESGPRRSTRLSGDATIPVGSSVLPVGGNGSGNSSAKLPGGLSSTKMNASSSLRSGTVRKGHSSAIESGFEDGKKYEALEDSGPEDTAANSSRRVGQVIMDDEPRIRNRSSGLIGRGSRVAXXXXXXXXXXXXXXXAFRHCCMHRCKEALQVFCKLPHHQYATGWVLCQVGKTHFEMVDYYEAERAFSWARRVSPYYLEGMDIYSTVLYHMKEEMKLSYLAQELSAIDRLSPQAWCALGNCYSLQKDHETALKTFQRAIQLDSRFTYAHTLCGHEYVAMEEFENGITCYRSALRIDPRHYNAWYGLGMIYLRQEKYDFAEHHFRTAFLINPRSSVLMCYLGMALHALKRNEEALEMLDQAILADAKNPLPIYQKANVLVSNERYNDAXXXXXXXXXVAPRESSVYSLIGKIYKRINMPERAMYHFGLALDLKPSTADVAIIKSAIEKLHVPDDIED
Q8LGU6______________MEAMLVDCVNNSLRHFVYKNAIFMCERLCAEFPSEVNLQLLATSYLQNNQAYSAYHLLKGTQMAQSRYLFALSCFQMDLLNEAESALCPVNEPGAEIPNGAAGHYLLGLIYKYTDRRKNAAQQFKQSLTIDPLLWAAYEELCILGAAEEATAVFGETAALSIQKQYMQQLSTSLGLNTYNEERNSTSTKNTSSEDYSPRQSKH---------TQSHGLKDISGNFHSHGVNGGVSNMSFYNTPSPVAAQLSGIAPPPLxxxxxxxxxNSLIT--DSSPKSTVNSTLQAPRRKFVDEGKLRK-------------ISGRLFSDSGPRRSSRLSADSGANINSSVATVSGNV--NNASKYLGG---SKLS-SLALRSVTLRKGHSWANEN-MDEGVRGEPFDDSRP-----NTASTTGSMASNDQEDETMSIGGIAMSSQTITIGVSEILNLLRTLGEGCRLSYMYRCQEALDTYMKLPHKHYNTGWVLSQVGKAYFELIDYLEAEKAFRLARLASPYCLEGMDIYSTVLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFLRAVQLNPRFAYAHTLCGHEYTTLEDFENGMKSYQNALRVDTRHYNAWYGLGMIYLRQEKLEFSEHHFRMAFLINPSSSVIMSYLGTSLHALKRSEEALEIMEQAIVADRKNPLPMYQKANILVCLERLDEALEVLEELKEYAPSESSVYALMGRIYKRRNMHDKAMLHFGLALDMKPPATDVAAIKAAMEKLHVPDEIDE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
299		33		66	1.0
1827	83		16		0.994512
1837	83		16		0.994512
2008	80			20	0.995493
2009	80			20	0.995493
2113	75		25		0.996473
2114			25	75	0.996473
2211			20	80	0.995493
2212	80		20		0.995493
2213			20	80	0.995493
2266	87			12	0.992554
2323	80	20			0.999996
2325	80			20	0.999996
2327	80		20		0.999996
2328		20	80		0.999996
2329			80	20	0.999996
2330	80		20		0.999996
2337		33	66		1.0
2663		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain