SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4017

Length: 2479 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4017
CGTCGTGACCTTGGCTGTCACTCAATTTTTATGATGAAAGATGTTCAGACAAGCGATGTGAGGATTTTGACGAAGGCCCCAATTTGCGGGAGCAAGCCTAGTTAGTTCCCTGTTGAGGGGCCTCTGGGACAGCACTACAAAATTCACGGCCCCTCTTACTCCCAATGCTTGTTGTAGATGACAGAATAAATTCTGGATTCGCTGTGCAATGATTTGACCGCATCTGTGAACAAATTACACCATCTTTTTTATATTTATACCTAAAATGAGCATGCCCAATATCCTTTTCTCGAGCTCCTGGATAATCATTCCCAAGGTTTAGCTTTTGGGCGCCTTTCGTTCAGGAGGCCCATCGAGATCATATTGTTTTGGGTTACGTGCAAAAACAATCACGCATCATGAGGTGGCTCAATAAGATTTTTAAAGGCTCTAATCACAGGATATCAGAGGGCCAATATCAGGGAGTATTTGCAGATGAAGATAGGGTTTGGGATATGCCTTCTGGCTCTTTGAATGGGCATGCACATAGTGGAAATGAGGATTTGGATCACGCTATTGCACTTTCTCTCTCCGAGGAAGAACAAAGAAAGGCGAATAGCGGAGGGGGCAGTTCTGAAGTGGAAGATGATGAAGAACTTGCTAGAGCTCTACAAGCAAGCTTGGACATTGGCTCCCCTCCACGTTCAAATCAAAGTCCTATTTATCCTTCGACATATGGTTATCCTACAGGATACAAGATTTGTGCTGGGTGCAATAATGAGATAGGCTATGGCCGCTTTTTGAGCTGTATGGGAGCTGTTTGGCATCCTCAGTGTTTTCGTTGTCATGCTTGTGGCGAGCCTATTTCAGAACACGAGTTTTCCATGTCAGGAAATGATCCATACCACAAATCCTGTTACAAGGAACGCTACCATCCAAAATGTGATGTCTGTAACCATTTTATACCAACAAATAGAGCTGGGCTAATTGAGTACAGAGCCCATCCATTTTGGGGACAGAGGTACTGTCCTTCGCATGAACATGATAACACTCCTCGGTGCTGCAGTTGTGAACGTATGGAGCCAAGGAATGTACAATATATTTCACTAGATGATGGTCGAAAACTCTGTCTTGAGTGCTTGGATTCAGCAATTATGGATACAAATGAATGCCAACCACTTTATATTGAAATTAGAGACTTCTATGAAGGCATGAATATGAGAATAAGCCAGCAAATTCCAATGCTGCTGGTTGAAAGGCAAGCACTGAATGAAGCCATGCAGGGTGAGAAGGAAGGAAGCCATCACATGCCAGAAACTAGAGGACTCTGCCTTTCAGAGGAACAGACTGTCAGCACTATTGCTAGAAGGCCTAGGATTGGAGGTAATCGCATTATAGACATGTTCACCGAATCCAGAAAACTTACCAGAAGATGTGAAGTCACAGCTATTCTCATTCTCTATGGTCTTCCCAGATTACTATCAGGTTCAATTTTGGCCCATGAGTTGATGCATGCATGGTTGCGCCTCAACGGTTTCCGTACTCTCAGTCCTGATGTTGAGGAAGGCATTTGTCAGGTTCTTTCACATATGTGGCTGGAATCAGAGGTCATGGCAGGATCTGGATCAAGTAGTCATGGAGCATCAACATCATCAGGAATATCTTCCTCCTCTTCATCTAAAAAAGGAGTCAGATCACAGTTTGAGAAGAAACTTGGGGAGTTCTTCATGCATCAAATTGCAATGGATTCTTCACCAGCATATGGAGATGGTTTCAGAGCTGGTAATGCAGCAATGCTTCAGTATGGTTTAAAAAGAACTTTGGATCATATTCGAATGACAGGCAACTTTCCTTAGGATTTTATCTTCTGTAAACTTATTGTGGATTCTAGATGTTTCGTCTTCCTTGCTCTATGGGCAAACGTGGCCCGATTGATGTATTCTATCAAAGTATTCTAATCAATAATACAAAAAGGTGCAGTATAGGTACTGATTATTGGGACTATTTATTTTCAGTGGTTCCTATTTTTTTGTCATGTTTTCGGTGTGAATGCAAAGGCAATTAGAAGAAGGATTCTTGATTTATAAGGCAGAATCATGAGTCATTTGGAAACAGGATGCCTGCTCCTTTCAGCTCAGCAAATTTATGTGGAACTGACGGAAAACTGTGGGGAAGATGCTTTCCCTGAACTACTTTTGTGGATAATTAATGGTCCAGATTCAAGGTAGTGAAATTTACTCTATCAGGCAACGCCTTGATTTAGTGATTAAAGACATGTTAAAAGTACAAAATGTGACTGATTTTCGAGGCCTAAAATGTTGTTTTCGAAGCAAATGGTGAAATAAAAGAGAAATTATGTATCTTCATATTAACATTGAAATGATGTGGTCAAATTTTGGGTTCTGCACTTAGTGGACCATTCTTGTATGTTTCTATCACAGTTAAAGTAGTCCAGTCTGGTTGCATAGTGATGCTTACATTATCCTATATTGTGTTCCGA

Ace file of the UniGene sp_v1.1_unigene4017

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc ion binding protein, putative	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	zinc ion binding	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, LIM-type	IPR001781	-	80%
Blast2go	Ubiquitin interacting motif	IPR003903	-	80%
Blast2go	Protein of unknown function DUF3633	IPR022087	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR15

Fln msg:

Fln protein: MRWLNKIFKGSNHRISEGQYQGVFADEDRVWDMPSGSLNGHAHSGNEDLDHAIALSLSEEEQRKANSGGGSSEVEDDEELARALQASLDIGSPPRSNQSPIYPSTYGYPTGYKICAGCNNEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKERYHPKCDVCNHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYIEIRDFYEGMNMRISQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSTIARRPRIGGNRIIDMFTESRKLTRRCEVTAILILYGLPRLLSGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAGSGSSSHGASTSSGISSSSSSKKGVRSQFEKKLGEFFMHQIAMDSSPAYGDGFRAGNAAMLQYGLKRTLDHIRMTGNFP*

Protein Length: 480

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTATGATGAAAGATGTTCAGACAAGCGATGTGAGGATTTTGACGAAGGCCCCAATTTGCGGGAGCAAGCCTAGTTAGTTCCCTGTTGAGGGGCCTCTGGGACAGCACTACAAAATTCACGGCCCCTCTTACTCCCAATGCTTGTTGTAGATGACAGAATAAATTCTGGATTCGCTGTGCAATGATTTGACCGCATCTGTGAACAAATTACACCATCTTTTTTATATTTATACCTAAAATGAGCATGCCCAATATCCTTTTCTCGAGCTCCTGGATAATCATTCCCAAGGTTTAGCTTTTGGGCGCCTTTCGTTCAGGAGGCCCATCGAGATCATATTGTTTTGGGTTACGTGCAAAAACAATCACGCATC_-_ATGAGGTGGCTCAATAAGATTTTTAAAGGCTCTAATCACAGGATATCAGAGGGCCAATATCAGGGAGTATTTGCAGATGAAGATAGGGTTTGGGATATGCCTTCTGGCTCTTTGAATGGGCATGCACATAGTGGAAATGAGGATTTGGATCACGCTATTGCACTTTCTCTCTCCGAGGAAGAACAAAGAAAGGCGAATAGCGGAGGGGGCAGTTCTGAAGTGGAAGATGATGAAGAACTTGCTAGAGCTCTACAAGCAAGCTTGGACATTGGCTCCCCTCCACGTTCAAATCAAAGTCCTATTTATCCTTCGACATATGGTTATCCTACAGGATACAAGATTTGTGCTGGGTGCAATAATGAGATAGGCTATGGCCGCTTTTTGAGCTGTATGGGAGCTGTTTGGCATCCTCAGTGTTTTCGTTGTCATGCTTGTGGCGAGCCTATTTCAGAACACGAGTTTTCCATGTCAGGAAATGATCCATACCACAAATCCTGTTACAAGGAACGCTACCATCCAAAATGTGATGTCTGTAACCATTTTATACCAACAAATAGAGCTGGGCTAATTGAGTACAGAGCCCATCCATTTTGGGGACAGAGGTACTGTCCTTCGCATGAACATGATAACACTCCTCGGTGCTGCAGTTGTGAACGTATGGAGCCAAGGAATGTACAATATATTTCACTAGATGATGGTCGAAAACTCTGTCTTGAGTGCTTGGATTCAGCAATTATGGATACAAATGAATGCCAACCACTTTATATTGAAATTAGAGACTTCTATGAAGGCATGAATATGAGAATAAGCCAGCAAATTCCAATGCTGCTGGTTGAAAGGCAAGCACTGAATGAAGCCATGCAGGGTGAGAAGGAAGGAAGCCATCACATGCCAGAAACTAGAGGACTCTGCCTTTCAGAGGAACAGACTGTCAGCACTATTGCTAGAAGGCCTAGGATTGGAGGTAATCGCATTATAGACATGTTCACCGAATCCAGAAAACTTACCAGAAGATGTGAAGTCACAGCTATTCTCATTCTCTATGGTCTTCCCAGATTACTATCAGGTTCAATTTTGGCCCATGAGTTGATGCATGCATGGTTGCGCCTCAACGGTTTCCGTACTCTCAGTCCTGATGTTGAGGAAGGCATTTGTCAGGTTCTTTCACATATGTGGCTGGAATCAGAGGTCATGGCAGGATCTGGATCAAGTAGTCATGGAGCATCAACATCATCAGGAATATCTTCCTCCTCTTCATCTAAAAAAGGAGTCAGATCACAGTTTGAGAAGAAACTTGGGGAGTTCTTCATGCATCAAATTGCAATGGATTCTTCACCAGCATATGGAGATGGTTTCAGAGCTGGTAATGCAGCAATGCTTCAGTATGGTTTAAAAAGAACTTTGGATCATATTCGAATGACAGGCAACTTTCCTTAG___GATTTTATCTTCTGTAAACTTATTGTGGATTCTAGATGTTTCGTCTTCCTTGCTCTATGGGCAAACGTGGCCCGATTGATGTATTCTATCAAAGTATTCTAATCAATAATACAAAAAGGTGCAGTATAGGTACTGATTATTGGGACTATTTATTTTCAGTGGTTCCTATTTTTTTGTCATGTTTTCGGTGTGAATGCAAAGGCAATTAGAAGAAGGATTCTTGATTTATAAGGCAGAATCATGAGTCATTTGGAAACAGGATGCCTGCTCCTTTCAGCTCAGCAAATTTATGTGGAACTGACGGAAAACTGTGGGGAAGATGCTTTCCCTGAACTACTTTTGTGGATAATTAATGGTCCAGATTCAAGGTAGTGAAATTTACTCTATCAGGCAACGCCTTGATTTAGTGATTAAAGACATGTTAAAAGTACAAAATGTGACTGATTTTCGAGGCCTAAAATGTTGTTTTCGAAGCAAATGGTGAAATAAAAGAGAAATTATGTATCTTCATATTAACATTGAAATGATGTGGTCAAATTTTGGGTTCTGCACTTAGTGGACCATTCTTGTATGTTTCTATCACAGTTAAAGTAGTCCAGTCTGGTTGCATAGTGATGCTTACATTATCCTATATTGTGTTCCGA

Fln Alignment:

sp_v1.1_unigene4017___MRWLNKIFKGSNHRISEGQYQGVFADEDRVWDMPSGSLNGHAHSGNEDLDHAIALSLSEEEQRKANXXXXXXXXXXXXXLARALQASLDIGSPPRSNQSPIYPSTYGYPTGYKICAGCNNEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKERYHPKCDVCNHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYIEIRDFYEGMNMRISQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSTIARRPRIGGNRIIDMFTESRKLTRRCEVTAILILYGLPRLLSGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAXXXXXXXXXXXXXXXXXXXXXKKGVRSQFEKKLGEFFMHQIAMDSSPAYGDGFRAGNAAMLQYGLKRTLDHIRMTGNFP
B8LR15______________MRWLDKIFKGSNHRISEGQYQGVFADENSVWDMPSGSLDGHAHSGNEDLDHAIALSLSEEEQRKANNIGGSSEVDDDEELARALQASLDIGSPPRSNQSSIYPSTHAYPTGYKICAGCNTEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKELYHPKCDVCSHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYLEIRDFYEGMNMKINQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSSISRRPRIGGNRIIDMFTESKKLTRRCEVTAILILYGLPRLLTGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAGSGSSSHGASTSSGISSSSSSKKGAKSQFEKKLGDFFMHQITMDSSPAYGDGFRAGNAAMLRYGLKRTLDHIRLTGNFP

SNPs (tot: 9)

Position	A %	C %	T %	Probability
363	20		80	0.995493
1431		10	90	0.90298
1929	93	6		0.999453
2337		42	57	1.0
2344		16	83	0.999991
2349	11		88	0.923564
2350		11	88	0.923564
2356		16	83	0.994512
2361		25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain