SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4012

Length: 1381 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4012

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0666 FOG: Ankyrin repeat	-	-	2.0e-16	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	aberrant large forked	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	0.0	73%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN39

Fln msg: your sequence is longer than subject: 316 - 247

Fln protein: MFLVIQIANPNIFSHKPSNVHVLNSPISSYLSFLRSKGGSQQYPHPVSRKAQNNSSLGIINWVLQKPTNAGSSRSVTIPFVWEEPAVYDSEEEGSIQGLSPLEFIRENDNKARMAEENEQLIKEVEKLLEPEEKAILQKNEVPDFTKLTSPKWIPFHTLATTGQILLIDDVLKHGFDVNAANKDGLTAIHKAVLCKREAVVSRLLKRGADPHVRDKDGATLLHYAVLVAAIQTLKLLIKHGVDVNLADNEGWTPLHLAVQSRTRDVAKILLVNGADKTMKNKDGNTPYDVAISLGKGFKTYEITKLLKLVPATGV*

Protein Length: 317

Fln nts: CTGTTTTCTGCCCACATTAGATTTCCCGTGCCATCAATAAACACTCCGCTCAAAACAAAAGCAGAAACCTTGCAAACACA_-_ATGTTTCTGGTCATCCAAATTGCCAATCCCAACATTTTTTCTCACAAACCTTCCAATGTCCATGTACTCAATAGCCCCATTTCTTCATATTTATCCTTTCTTAGATCGAAGGGTGGATCCCAACAATATCCTCATCCCGTGTCACGCAAAGCTCAGAATAATAGCAGTCTTGGAATCATCAATTGGGTGTTGCAGAAACCCACAAATGCAGGGTCTTCACGGTCTGTTACTATTCCCTTTGTCTGGGAAGAGCCTGCCGTGTATGACAGCGAAGAGGAAGGTTCAATTCAGGGTTTAAGTCCCTTAGAGTTTATTAGGGAGAATGACAACAAAGCAAGGATGGCAGAAGAAAATGAGCAGCTGATAAAAGAAGTAGAGAAATTATTAGAACCAGAGGAAAAGGCTATTTTGCAAAAGAATGAAGTTCCTGATTTCACCAAGTTGACTTCGCCAAAATGGATACCTTTTCATACGCTTGCAACAACGGGGCAGATTCTCCTTATCGATGATGTACTGAAACATGGCTTTGATGTTAATGCTGCTAACAAGGATGGTTTGACTGCTATTCATAAGGCAGTGCTATGCAAAAGGGAGGCTGTGGTCAGCCGTCTTCTCAAAAGAGGAGCAGATCCTCATGTTCGAGATAAGGATGGCGCTACATTGCTACATTATGCTGTTCTAGTTGCTGCAATTCAGACATTAAAGCTGTTAATCAAGCACGGTGTTGATGTAAATTTGGCAGACAATGAAGGGTGGACACCGCTGCATCTTGCAGTACAAAGCAGGACAAGAGATGTGGCCAAAATTTTGTTGGTCAATGGTGCTGATAAAACAATGAAAAATAAGGATGGGAATACGCCTTATGATGTAGCTATAAGTTTAGGAAAAGGGTTTAAGACGTATGAAATTACGAAGTTATTAAAACTTGTACCAGCAACAGGGGTGTAA___GAGAACTTTGTGGAGATCTTGGTGAAGTTAAGTTGATGATTCACGTGTAAGAAAGAATTTTCTGGAGATCTCGATGAAACTGTTTGGTTCAGTCAATCATCATCTTCTACATAGGGTTTTCTGATAAAGCCATTCAATCATCTATATAACTACATTTAAGCAATTATGTATGATCATTTGAATCTCATTTCTGGGCAGAAACTTTTGGCATTTATATTGACAGTTTTGCTCTGTTTCAAGTCTGAATAGCATAGGACGTCTCTATATTTTCTATTGACATGATATTGCCCATCTATGTCAGGATACGAATGTATTTCAATTTTTTCACTGAAAGGGCCTAGTGAACGTTGAAC

Fln Alignment:

sp_v1.1_unigene4012___WIPFHTLATTGQILLIDDVLKHGFDVNAANKDGLTAIHKAVLCKREAVVSRLLKRGADPHVRDKDGATLLHYAVLVAAIQTLKLLIKHGVDVNLADNEGWTPLHLAVQSRTRDVAKILLVNGADKTMKNKDGNT
A9NN39______________WTPLHSAVSSGHANVVEALLQAGADVSVANNGGRTALHYAASKGRVKIAQDLISNGANIRKKDKFGCTPLHRAASAGHPEICELLIEEGADVDATDKTGQTPLMNAVISNDKQIALLLVRHGADVDCEDNEGYT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
858	25		75		0.996473
870		25	75		0.996473
945	20			80	0.995493
1030	25		75		0.996473
1094		47	52		1.0
1104		43		56	1.0
1118	60		40		1.0
1215	14			85	0.993533
1217	14			85	0.993533
1218		85	14		0.993533
1220	14			85	0.993533
1221	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain