SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4011

Length: 2020 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4011
CGTCGTGACCTTGGCTGTCACTCAGGCTTTTATATTTAACCGTGTGAAGATACCTTTCTATAGATGTTTGCATGAGCTTGCATGCAAATTTTGTGAAATTCTGCATCATAGAACACGATTGAGGTTATTAATATAATGTGAGACCATAGCTCGTGCTGGCTTTTGCTTCACTTATTATGATTTATGAGCTTAAGATGAAGAGTATGCTTTGCTCTTGGCTCCAGTGGCTGCTCCATTACGAAGTAAACTCTGAATTAGCTTGCGGGCATTTTGACTAAGAAGTTGGATCCACGGCTCTTCATTTCACAGAAAAGTATTCGAGCTTTTGGTTGCCGTCATTAGCGGGGAAGTTGAATGGGGTTGCAACCAAAATTGCAGCGATGGCTGTGTTTGGTTATGTATATCTTATTTGGCATAGCTGTGCAAATTAGCGGAGGTCCGCGGGAGGATTTAATTGATAGACTGCCTGGTCAGCCAAAAGTAAATTTCAAACAATATGCTGGATACATCACGGTCGATGATCACGCTGGCCGCGCATTGTTTTATTATTTTGCTGAAGCAGAGAATGATTCGGACTCCAAGCCTGTTGCTTTATGGTTAAATGGAGGTCCGGGCTGTTCTTCACTTGGGGGTGGTGCATTTACGGAGCTAGGCCCGTTTTATCCACAAGGCAATGGCCGAGGACTTCGAAAAAATTTACAATCCTGGAACAAAGCATCAAACCTCCTTTTCGTAGAATCACCTGCTGGAGTTGGTTGGTCGTATTCAAATACCACTGCAGACTACACATGCGGTGATGGATCTACAGCGAAGAATATGCTTGTGTTTCTTTCTAGGTGGTTTAAAAGGTTTCCTGAATATGCATCCAGAGATTTATTCTTAACTGGCGAAAGCTACGCAGGGCATTATATACCACAGTTAGCGAGCAAATTGCTAAAATACAACAAAGTGGCCAAAAGATATAAATTCAACCTTAAGGGAATATCTATTGGCAACCCATTGCTTAGCCTTAATGTTGATACGATGGCGAGTTATGAGTTTTTATGGTCACATGGGCTGATTTCTGATGAGTCTAATATTGCTATCCGGAAAAGTTGCAATTTTGACAAGCGTATCAAAAATGTTGATGTCATTGATATCTCCAAAGAGTGTGATGATATATTAAAACAGGTAGAACAGGAAGTTGGTGACTATGTTAATGAATATGACGTGATACTTGATGTTTGTCCCCCATCACTTATTGAACAGGAGCTTCGATTAAGGAAAAAGGTAAGCCATATAAGCCTAGGAGTTGATGTCTGCATGACCAGCGAGAGAAGTTTTTATTTCAACTTGCCGCAAGTTCAAAAGGCACTCCATGCAAATAGAACGAATTTGCCATACGAATGGAGTATGTGTAGCGATGTCCTGAATTACTCATCATATGACGAAGGCATCGACATTCTTCCTGTCCTTAAGGGCATCATTCAAGAAGGTATCCGTGTTTGGATTTTCAGTGGAGATCAGGACTCTGTTGTGCCATTGATGGGTTCGCGGACTAATGTTCGTCATTTAGCTAATGATTTAAAGCTGTCTGTCAGAGTACCTTATCGTGCTTGGTACCATCAAGGGCAGGTAGCTGGGTGGACAACTGTATATGGAGACTTGCTGACCTTTGCAACAGTGCGAGGGGCATCTCACATGGTTCCGTATTCTCAACCTGCTAGAGCACTGCATTTGTTTAAAACATTCCTATCTGGTAAAGACCTACCAGACCAGCAATGAAGTTTTGCACAATAAAGCGTCCATGAAATAAAATAAACATCTTAATTAAAAATTGACATAGACTGTGCTTATGTACTATTGTTTCATTTTATAAATAAATGAGAAAAAATGGCCATACAGAAATAGTGTGGAAATAAGGCTTTTTGGTGATCACATTATGGTAAGCTTAACATTAGTATGTTCAAGGTTCGTTTGGTGGTGTGAATGATTAGAATTGAGTTCCAATTACTTGACTCTGTTAGTGTAATTATTTTTA

Ace file of the UniGene sp_v1.1_unigene4011

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SJJ0_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	serine carboxypeptidase-like enzyme	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX75

Fln msg:

Fln protein: MGLQPKLQRWLCLVMYILFGIAVQISGGPREDLIDRLPGQPKVNFKQYAGYITVDDHAGRALFYYFAEAENDSDSKPVALWLNGGPGCSSLGGGAFTELGPFYPQGNGRGLRKNLQSWNKASNLLFVESPAGVGWSYSNTTADYTCGDGSTAKNMLVFLSRWFKRFPEYASRDLFLTGESYAGHYIPQLASKLLKYNKVAKRYKFNLKGISIGNPLLSLNVDTMASYEFLWSHGLISDESNIAIRKSCNFDKRIKNVDVIDISKECDDILKQVEQEVGDYVNEYDVILDVCPPSLIEQELRLRKKVSHISLGVDVCMTSERSFYFNLPQVQKALHANRTNLPYEWSMCSDVLNYSSYDEGIDILPVLKGIIQEGIRVWIFSGDQDSVVPLMGSRTNVRHLANDLKLSVRVPYRAWYHQGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFKTFLSGKDLPDQQ*

Protein Length: 471

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTTTATATTTAACCGTGTGAAGATACCTTTCTATAGATGTTTGCATGAGCTTGCATGCAAATTTTGTGAAATTCTGCATCATAGAACACGATTGAGGTTATTAATATAATGTGAGACCATAGCTCGTGCTGGCTTTTGCTTCACTTATTATGATTTATGAGCTTAAGATGAAGAGTATGCTTTGCTCTTGGCTCCAGTGGCTGCTCCATTACGAAGTAAACTCTGAATTAGCTTGCGGGCATTTTGACTAAGAAGTTGGATCCACGGCTCTTCATTTCACAGAAAAGTATTCGAGCTTTTGGTTGCCGTCATTAGCGGGGAAGTTGA_-_ATGGGGTTGCAACCAAAATTGCAGCGATGGCTGTGTTTGGTTATGTATATCTTATTTGGCATAGCTGTGCAAATTAGCGGAGGTCCGCGGGAGGATTTAATTGATAGACTGCCTGGTCAGCCAAAAGTAAATTTCAAACAATATGCTGGATACATCACGGTCGATGATCACGCTGGCCGCGCATTGTTTTATTATTTTGCTGAAGCAGAGAATGATTCGGACTCCAAGCCTGTTGCTTTATGGTTAAATGGAGGTCCGGGCTGTTCTTCACTTGGGGGTGGTGCATTTACGGAGCTAGGCCCGTTTTATCCACAAGGCAATGGCCGAGGACTTCGAAAAAATTTACAATCCTGGAACAAAGCATCAAACCTCCTTTTCGTAGAATCACCTGCTGGAGTTGGTTGGTCGTATTCAAATACCACTGCAGACTACACATGCGGTGATGGATCTACAGCGAAGAATATGCTTGTGTTTCTTTCTAGGTGGTTTAAAAGGTTTCCTGAATATGCATCCAGAGATTTATTCTTAACTGGCGAAAGCTACGCAGGGCATTATATACCACAGTTAGCGAGCAAATTGCTAAAATACAACAAAGTGGCCAAAAGATATAAATTCAACCTTAAGGGAATATCTATTGGCAACCCATTGCTTAGCCTTAATGTTGATACGATGGCGAGTTATGAGTTTTTATGGTCACATGGGCTGATTTCTGATGAGTCTAATATTGCTATCCGGAAAAGTTGCAATTTTGACAAGCGTATCAAAAATGTTGATGTCATTGATATCTCCAAAGAGTGTGATGATATATTAAAACAGGTAGAACAGGAAGTTGGTGACTATGTTAATGAATATGACGTGATACTTGATGTTTGTCCCCCATCACTTATTGAACAGGAGCTTCGATTAAGGAAAAAGGTAAGCCATATAAGCCTAGGAGTTGATGTCTGCATGACCAGCGAGAGAAGTTTTTATTTCAACTTGCCGCAAGTTCAAAAGGCACTCCATGCAAATAGAACGAATTTGCCATACGAATGGAGTATGTGTAGCGATGTCCTGAATTACTCATCATATGACGAAGGCATCGACATTCTTCCTGTCCTTAAGGGCATCATTCAAGAAGGTATCCGTGTTTGGATTTTCAGTGGAGATCAGGACTCTGTTGTGCCATTGATGGGTTCGCGGACTAATGTTCGTCATTTAGCTAATGATTTAAAGCTGTCTGTCAGAGTACCTTATCGTGCTTGGTACCATCAAGGGCAGGTAGCTGGGTGGACAACTGTATATGGAGACTTGCTGACCTTTGCAACAGTGCGAGGGGCATCTCACATGGTTCCGTATTCTCAACCTGCTAGAGCACTGCATTTGTTTAAAACATTCCTATCTGGTAAAGACCTACCAGACCAGCAATGA___AGTTTTGCACAATAAAGCGTCCATGAAATAAAATAAACATCTTAATTAAAAATTGACATAGACTGTGCTTATGTACTATTGTTTCATTTTATAAATAAATGAGAAAAAATGGCCATACAGAAATAGTGTGGAAATAAGGCTTTTTGGTGATCACATTATGGTAAGCTTAACATTAGTATGTTCAAGGTTCGTTTGGTGGTGTGAATGATTAGAATTGAGTTCCAATTACTTGACTCTGTTAGTGTAATTATTTTTA

Fln Alignment:

sp_v1.1_unigene4011___MGLQPKLQRWLCLVMYILFGIAVQISGGPREDLIDRLPGQPKVNFKQYAGYITVDDHAGRALFYYFAEAENDSDSKPVALWLNXXXXXXXXXXXAFTELGPFYPQGNGRGLRKNLQSWNKASNLLFVESPAGVGWSYSNTTADYTCGDGSTAKNMLVFLSRWFKRFPEYASRDLFLTGESYAGHYIPQLASKLLKYNKVAKRYKFNLKGISIGNPLLSLNVDTMASYEFLWSHGLISDESNIAIRKSCNFDKRIKNVDVIDISKECDDILKQVEQEVGDYVNEYDVILDVCPPSLIEQELRLRKKVSHISLGVDVCMTSERSFYFNLPQVQKALHANRTNLPYEWSMCSDVLNYSSYDEGIDILPVLKGIIQEGIRVWIFSGDQDSVVPLMGSRTNVRHLANDLKLSVRVPYRAWYHQGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFKTFLSGKDLPDQQ
A9NX75______________MDVQPKLQRWLCLVMYILFGIAVQISGGPAEDLIDRLPGQPKVNFKQYAGYITVDEHAGRALFYYFAEAEDDSDSKPVALWLNGGPGCSSVGGGAFTELGPFYPRDDGHGLRKNLQSWNKVSNLLFVESPAGVGWSYSNTTSDYTCGDESTARNMLVFLSKWFKRFPEYASRDLFLTGESYAGHYIPQLANKLLNYNKVAKRYKFNLKGISIGNPLLSLNVDTAASYEFLWSHGLISDESNIAILKSCKFDKRIKNVDVIDISKECDDILKQVEQEIGDYVNEYDVILDVCPPSLIEQELRLRKKVSHMSLGVDVCMTSERQFYFNLPNVQKALHANRTNLPYDWSMCSNVLNYSGYDEGIDILPVLKDIIQQGIRVWIFSGDQDSVVPLMGSRTNVRNLANDLKMSVKVPYRAWYHEGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFRTFLSGKDLPDQQ

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1003	12	87			0.992554
1005		87		12	0.992554
1024		85		14	0.993533
1265			25	75	0.996473
1267	75		25		0.996473
1271	75			25	0.996473
1272	75		25		0.996473
1274	75	25			0.996473
1278		25		75	0.996473
1279	75	25			0.996473
1281		20	80		0.995493
1282		80		20	0.995493
1283		80	20		0.995493
1285			20	80	0.995493
1288	80	20			0.995493
1289	80			20	0.995493
1290	16		83		0.994512
1291		83		16	0.994512
1292		80	20		0.995493
1293			20	80	0.995493
1294	80		20		0.995493
1438	83			16	0.999991
1442	83		16		0.999991
1445		16	83		0.999991
1446	83			16	0.999991
1816	57		42		1.0
1828	57	42			1.0
1830	57		42		1.0
1891	60		40		1.0
1912		60		40	1.0
1923		20		80	0.995493
1926	20	80			0.995493
1928	20			80	0.995493
1929	20			80	0.995493
1931	20			80	0.995493
1966		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain