SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3984

Length: 1086 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3984 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cl31164_1a; LOC100282700; K09598 signal peptide peptidase-like 3 [EC:3.4.23.-]	-	-	2.0e-20	80%
FL-Next	tr=Putative uncharacterized protein Sb07g024080; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	80%
Blast2go	signal peptide peptidase-like 3	-	-	4.49919e-20	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	2.0e-20	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	endosome	GO:0005768	Cellular Component	4.49919e-20	81%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
808	66		33		0.997452
809		66		33	0.997452
814	66		33		0.997452
815		33		66	0.997452
816	66			33	0.997452
866		85	14		0.993533
867	14	85			0.993533
868		14	85		0.993533
869	14			85	0.993533
876	85		14		0.993533
877			14	85	0.993533
879		14	85		0.993533
881	85	14			0.993533
885	85		14		0.993533
1023		25	75		0.996473
1024		25		75	0.996473
1025		25	75		0.996473
1026	25		75		0.996473
1043	66	33			0.997452
1044	66	33			0.997452
1045		33	66		0.997452
1046	66	33			0.997452
1048	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain