SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3966

Length: 1535 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3966

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain	-	-	3.0e-15	60%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	64%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	0.0	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	74%
Blast2go	Heat shock protein DnaJ	IPR003095	-	74%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9H1H4

Fln msg:

Fln protein: MARWLSIAAFVIALSLAVPSTSAIYCEEDDCYDLLGLTQSATSAEIKKAYYKLSLKYHPDKNPDPAARPLFVKIANAYEILKDDATREQYDYAIAHPEEVFYNTARYYQAYYGYKTDLRAVLVGLLLILSAFQYLNQWTRHQQIISMVKKTPAYKNKLKALEFERNGGMANKRKGPKQKNKDEVDDELSRELELQIQGAENPSFWKLFGTRFVLLPYTLGKLALWACCWCWRYRIKCLPYTWDDACYLTKGCLGIPFETWICMDEAVKEELVNKRLWVKANMENYRSELKKDPVKRRR*

Protein Length: 300

Fln nts: CTGAATTTGCTGATAAGAGAGCGTTCGAAGCCCTCTCTGTCCTCTTTCCGCTGAGCTGATATCAGGTCGATCGGGAGCAGCA_-_ATGGCGAGATGGTTGTCAATCGCAGCATTCGTAATCGCGTTGTCATTGGCGGTGCCTTCGACTTCAGCAATTTACTGCGAGGAAGACGATTGCTATGATCTCCTTGGCTTGACCCAGTCGGCGACCTCTGCGGAAATCAAGAAGGCCTACTACAAGCTATCGTTGAAATACCATCCCGACAAGAATCCTGATCCCGCAGCGAGGCCGCTTTTTGTGAAAATAGCGAATGCTTATGAGATTTTGAAGGATGATGCCACTAGGGAGCAATATGATTATGCTATTGCCCATCCAGAAGAGGTCTTCTATAACACTGCTCGCTATTATCAGGCCTACTATGGTTACAAAACAGACCTTCGAGCAGTTTTGGTTGGGCTTCTTCTTATTTTATCAGCATTCCAGTACTTGAATCAGTGGACCAGGCATCAGCAGATAATAAGTATGGTTAAAAAGACACCAGCTTATAAGAATAAATTGAAAGCATTGGAGTTTGAACGCAATGGAGGGATGGCAAACAAGAGGAAAGGTCCAAAACAAAAGAACAAGGATGAAGTGGATGATGAGCTTAGCAGGGAACTTGAATTACAAATTCAAGGAGCTGAAAATCCATCTTTTTGGAAACTTTTTGGAACTCGATTTGTACTTCTTCCATATACACTTGGGAAGTTGGCGTTATGGGCGTGTTGTTGGTGTTGGAGGTACAGGATAAAATGCTTACCCTATACTTGGGATGATGCATGCTATTTAACAAAAGGATGTCTTGGAATCCCTTTTGAAACTTGGATTTGTATGGACGAAGCAGTAAAGGAGGAGCTTGTAAACAAACGATTATGGGTCAAAGCAAACATGGAAAATTATCGTTCCGAACTGAAGAAAGATCCAGTGAAGCGTAGGAGATAA___AATAATATGCACATTAACTAATTTATTCATTCTCTTATTTTACAGAGGGAAAAAAAGGTCAAAAAAAGTGAGAGGTGTGCCCTGCATATTGCATTACCTTCCTACAGTTTAGAGAAGTTTAGAAGTTAGTTTTAGGATTCATTTTGAGGCCTGGAACGGGCAGTGTATCGTTGCTTACGGTGGATCTATGGTCGGTAGGCTCGCAGTTTGGATCTATGGTCGGTAGGATCGCAGTTTGAATGTAAGAATGAAGCTGAAGGGGACAACAAGTGATACAAATGGAGGATTCTTGACTAACAACGTGGTTAATAGTGCTGTTGGCATCGAGAATAATATCAACGCCACCATTGTATTGCCCTCCAACACTGCAATTGTGTTGATTACCTTCCCTAATTTAGTTGTCATATTACTAAATACCATTGCCTCCAGATCTGCCATTGTAACTCTTTTAATAATGAGAGAAATCTTCATAGAAAATTATAAATTAAAACATCCGTGCTATCAATATTTTTTACCCGGAGACCAACCATTACTTCCTCCCATGATTTTATTAATA

Fln Alignment:

sp_v1.1_unigene3966___AAFVIALSLAV--PSTSAIYCEEDDCYDLLGLTQSATSAEIKKAYYKLSLKYHPDKNPDPAARPLFVKIANAYEILKDDATREQYDYAIAHPEEVFYNTARYYQAYYGYKTDXXXXXXXXXXXXSAFQYLNQWTRHQQIISMVKKTPAYKNKLKALEFERNGGMANKRKGPKQKNKDEVDDELSRELELQIQGAENPSFWKLFGTRFVLLPYTLGKLALWACCWCWRYRIKCLPYTWDDACYLTKGCLGIPFETWICMDEAVKEELVNKRLWVKANMENYRSELKKDPVKRR
B9H1H4______________AALTLMFSILIISPSSSAIYCDEDDCYDLLGVTQNANASEIKKAYYKLSLKHHPDKNPDPESKKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNTARYYHAYYGHKTDPRFVLVGLLLILSGFQYMNEMTRYNQAVAMVKKTPAYKNRLRALELERSGGVTNKKKSNKQMDK-KVEEDLSKELELDIKGAHKPSIWELLGVRFIVLPYTIGKLLLWNGCWFWRYKVKQAPYSWEDAVYLTQRSLRVPLDAWGSIDESTKEDLVQRRLWEKSNLETYFADLRKESKRRR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
417	66		33		0.997452
472	28		71		1.0
473			85	14	0.993533
475	85		14		0.993533
477	14			85	0.993533
480	85			14	0.993533
481			85	14	0.993533
482			14	85	0.993533
483	85		14		0.993533
487		14	85		0.993533
489	85	14			0.993533
1127		75	25		0.996473
1181	20	75	4		1.0
1220	86	13			1.0
1244	78		21		1.0
1396	10			90	0.90298
1397	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain