SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3954

Length: 2008 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3954
CTTCCACATCAAATATCCTTTTGGGAAAAATGGCAGCGGATGCGGTGAACCTGAGTTTCAGCTTGTCTGTGACAAGAGCTACCATCCTCTGCTTAATATCAATGGAAACGAATATCGCATATTGGAGCCCTTCGACTTAGAGATTAATGAGCATCAAAATTCCATGACAATTGTTAACAATAATCTGTTTGGGGATAAATGCAATTTACCAGGTAACTTCTCTCAATTGTGGAGTTCCAACTCTCATTTTCAGGTTCTCGATACAAATCATGACATTAATCTCACCCTTTGGAAGGGTTGCGACCAAATTCCTAATCAGAGAATTGCTGGAGATCCGATTTTTCTTTGTGGTGATTCTTGGAACTACAGTTTCGGTCCAAATTTAATATCGGAAAAGCCGCCCTGTCATGGATTTCGACTACCAATTAAAGAAGAGTTGGCTGACCAGCTAATTGATAAGAACAGGGCTTTGGGGTTTGAGGTAACACTGCAGGTCAACCCGAGCAGTTTTAAAAGCTGTAACGCCTGTGTGAACAGTAGCGGAAGATGTGGTTATGGCAGCTCAAATCCGCCAAATTTTCTTTGCATTTGTCCCGACGACACATTGACTCCAGACATATGCTCCTCCAATGGAGGTCGAAACAAGTCAATTATAATAGGCTGTTCCATTGGAGGAGCTGCGCTGGTAGCAATAGCAGCAGCACTGCTCTTAAGGTTCTATGCCAAGAGGAGAAAAACTCTTAGCAGGGGTCTTGCTAGTGGGGACATGGAAGCAGCTATGCTCCCTCGGCGTGAGATAGGCAATTTGCCAATATTTTCTTATGAAGAACTTCAACAGGCTACAAATTGCTTCCACGAGGAGAACGAACTTGGGGATGGAGGGTTTGGGTCAGTCTATCTGGGGAAACTTCGGGACGGACGAACTGTGGCAGTAAAGAGACTTTACCAAGATAACTCTCGGAGGCTCGAACAGTTCATCAACGAGGTGAAGATATTTTCGACCTTGAATCATCCACACGTTGTTCGTCTTTATGGCTGCACCTCTGCAGATAGTCCGGAGCTGCTGCTTGTATACGAATTTGTCCCAAATGGGACCCTAGACGACCATCTTCATGGCGACCGCAAAAACCCCAATGGATTACAATGGAATGCCCGCTTGAACATTGCTATTCAAACTGCCGAGGCCTTGGCTTTTCTTCACAGCATTGATCCGCCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTCAATGTCAAAGTGGCAGATTTTGGGCTTTGCAGAATTGTGCCTGTCAACGCCTCACATGTAACCACTGCTCCACAAGGCACACCAGGGTATGTTGATCCGGAGTACCATCAGTGCTATCAATTGACGGAGAAATCCGATGTCTACAGCTTCGGAGTCGTTTTGGTGGAGATCATCTCTGCCAAATTAGCGGTGGACATAAATCGGAATAGAAACGAAATCGGCCTTGCTAACATGGCGAAATCGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATCCGCAGTTGGAGATTGAAGCAAATCATGCGCTGAAGGTCACGGTTAGTGCAGTTGCCGAATTAGCCTTTCGATGCCTTGCGTCAGAGAGGGATAGCAGGCCACACATGACGGAAGTTGCTGGACAGCTCAGGGAAATCAAACAATCGTGGGATACGTCCACTGATCCAGGTGAACAACAGTGGGGATCGTTTTCAAAGAGCAAACAGCCATTATCTCCCATCTCTGTGCAAGACAACTGGTCCAGTATAAGCTCCACCCCCAACATCAGTGCATAAATTTCTCCCTTATATACAATGTTTAATCTGCAGTTTTCCAGTTTGGTTAGGATTTTAGCTTTTATGTGTCACTGCACTCTATGAGCAGATGTTTTGCATATTTATTTGCAAAAACAGATATCACTGTATCACAGCTCGGAAGAAATTAGTCATTTACTTTATAAAAAAATTCAATTAGAAAGTGGG

Ace file of the UniGene sp_v1.1_unigene3954

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0689900 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5N7Q8_ORYSJ	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	wall-associated kinase 4-like	-	-	64%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	64%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	64%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	64%
Blast2go	Protein kinase-like domain	IPR011009	-	64%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	64%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	64%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ93

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 553 - 350

Fln protein: MTIVNNNLFGDKCNLPGNFSQLWSSNSHFQVLDTNHDINLTLWKGCDQIPNQRIAGDPIFLCGDSWNYSFGPNLISEKPPCHGFRLPIKEELADQLIDKNRALGFEVTLQVNPSSFKSCNACVNSSGRCGYGSSNPPNFLCICPDDTLTPDICSSNGGRNKSIIIGCSIGGAALVAIAAALLLRFYAKRRKTLSRGLASGDMEAAMLPRREIGNLPIFSYEELQQATNCFHEENELGDGGFGSVYLGKLRDGRTVAVKRLYQDNSRRLEQFINEVKIFSTLNHPHVVRLYGCTSADSPELLLVYEFVPNGTLDDHLHGDRKNPNGLQWNARLNIAIQTAEALAFLHSIDPPIFHRDVKSSNILLDENFNVKVADFGLCRIVPVNASHVTTAPQGTPGYVDPEYHQCYQLTEKSDVYSFGVVLVEIISAKLAVDINRNRNEIGLANMAKSKIQEGALHELVDPQLEIEANHALKVTVSAVAELAFRCLASERDSRPHMTEVAGQLREIKQSWDTSTDPGEQQWGSFSKSKQPLSPISVQDNWSSISSTPNISA*

Protein Length: 554

Fln nts: CTTCCACATCAAATATCCTTTTGGGAAAAATGGCAGCGGATGCGGTGAACCTGAGTTTCAGCTTGTCTGTGACAAGAGCTACCATCCTCTGCTTAATATCAATGGAAACGAATATCGCATATTGGAGCCCTTCGACTTAGAGATTAATGAGCATCAAAATTCC_-_ATGACAATTGTTAACAATAATCTGTTTGGGGATAAATGCAATTTACCAGGTAACTTCTCTCAATTGTGGAGTTCCAACTCTCATTTTCAGGTTCTCGATACAAATCATGACATTAATCTCACCCTTTGGAAGGGTTGCGACCAAATTCCTAATCAGAGAATTGCTGGAGATCCGATTTTTCTTTGTGGTGATTCTTGGAACTACAGTTTCGGTCCAAATTTAATATCGGAAAAGCCGCCCTGTCATGGATTTCGACTACCAATTAAAGAAGAGTTGGCTGACCAGCTAATTGATAAGAACAGGGCTTTGGGGTTTGAGGTAACACTGCAGGTCAACCCGAGCAGTTTTAAAAGCTGTAACGCCTGTGTGAACAGTAGCGGAAGATGTGGTTATGGCAGCTCAAATCCGCCAAATTTTCTTTGCATTTGTCCCGACGACACATTGACTCCAGACATATGCTCCTCCAATGGAGGTCGAAACAAGTCAATTATAATAGGCTGTTCCATTGGAGGAGCTGCGCTGGTAGCAATAGCAGCAGCACTGCTCTTAAGGTTCTATGCCAAGAGGAGAAAAACTCTTAGCAGGGGTCTTGCTAGTGGGGACATGGAAGCAGCTATGCTCCCTCGGCGTGAGATAGGCAATTTGCCAATATTTTCTTATGAAGAACTTCAACAGGCTACAAATTGCTTCCACGAGGAGAACGAACTTGGGGATGGAGGGTTTGGGTCAGTCTATCTGGGGAAACTTCGGGACGGACGAACTGTGGCAGTAAAGAGACTTTACCAAGATAACTCTCGGAGGCTCGAACAGTTCATCAACGAGGTGAAGATATTTTCGACCTTGAATCATCCACACGTTGTTCGTCTTTATGGCTGCACCTCTGCAGATAGTCCGGAGCTGCTGCTTGTATACGAATTTGTCCCAAATGGGACCCTAGACGACCATCTTCATGGCGACCGCAAAAACCCCAATGGATTACAATGGAATGCCCGCTTGAACATTGCTATTCAAACTGCCGAGGCCTTGGCTTTTCTTCACAGCATTGATCCGCCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTCAATGTCAAAGTGGCAGATTTTGGGCTTTGCAGAATTGTGCCTGTCAACGCCTCACATGTAACCACTGCTCCACAAGGCACACCAGGGTATGTTGATCCGGAGTACCATCAGTGCTATCAATTGACGGAGAAATCCGATGTCTACAGCTTCGGAGTCGTTTTGGTGGAGATCATCTCTGCCAAATTAGCGGTGGACATAAATCGGAATAGAAACGAAATCGGCCTTGCTAACATGGCGAAATCGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATCCGCAGTTGGAGATTGAAGCAAATCATGCGCTGAAGGTCACGGTTAGTGCAGTTGCCGAATTAGCCTTTCGATGCCTTGCGTCAGAGAGGGATAGCAGGCCACACATGACGGAAGTTGCTGGACAGCTCAGGGAAATCAAACAATCGTGGGATACGTCCACTGATCCAGGTGAACAACAGTGGGGATCGTTTTCAAAGAGCAAACAGCCATTATCTCCCATCTCTGTGCAAGACAACTGGTCCAGTATAAGCTCCACCCCCAACATCAGTGCATAAATTTCTCCCTTATATACAATGTTTAATCTGCAGTTTTCCAGTTTGGTTAGGATTTTAGCTTTTATGTGTCACTGCACTCTATGAGCAGATGTTTTGCATATTTATTTGCAAAAACAGATATCACTGTATCACAGCTCGGAAGAAATTAGTCATTTACTTTATAAAAAAATTCAATTAGAAAGTGGG

Fln Alignment:

sp_v1.1_unigene3954___IFSYEELQQATNCFHEENELGDGGFGSVYLGKLRDGRTVAVKRLYQDNSRRLEQFINEVKIFSTLNHPHVVRLYGCTSADSPELLLVYEFVPNGTLDDHLHGDRKNPNGLQWNARLNIAIQTAEALAFLHS-IDPPIFHRDVKSSNILLDENFNVKVADFGLCRIVPVNASHVTTAPQGTPGYVDPEYHQCYQLTEKSDVYSFGVVLVEIISAKLAVDINRNRNEIGLANMAKSKIQEGALHELVDPQLEIEANHALKVTVSAVAELAFRCLASERDSRPHMTEV
B8LQ93______________VFSLKELHSATNNFNYDNKLGEGAFGSVYWGQLWDGSQIAVKRLKVWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCS-EGQERLIVYDYMPNLSILSHLHGQHAAECLLDWSRRMNIAIGSAEGLAYLHHHATPHIIHRDIKASNVLLDSDFKAQVADFGFAKLIPEGETHVTTGVKGTVGYLAPEYAMWRKASENCDVYSFGILLLELVSGKKPVDKMDSNTKHTIVDWALPLVLEGKYDQLADPKFHGKYN---EEELKRVVHVAIMCAQNAPEKRPTMLEV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
401		83		16	0.994512
1329	42	57			1.0
1830		66	33		1.0
1872		12		87	0.992554
1955		50		50	1.0
1962		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain