SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3951

Length: 991 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3951

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carnitine/acylcarnitine carrier protein, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic response	GO:0006972	Biological Process	73%
Blast2go	L-arginine import	GO:0043091	Biological Process	73%
Blast2go	proline biosynthetic process	GO:0006561	Biological Process	73%
Blast2go	L-ornithine transmembrane transporter activity	GO:0000064	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX0

Fln msg: your sequence is shorter than subject: 274 - 308

Fln protein: RLQQPQPPMAAPTSALRMAQSIVKSQGPLGLYRGMGPPLATVALQNAVAFQVYAVLSRAFDGNRKKNEPPSYKSVALAGIGAGTIQTAILTPVELVKIRLQVNTARNPTSSSVKIGPIKEAKGIIQREGLKGLYRGLGITVLRDAPAHGVYFWTYEYSREWLHPGCRKSAEESLLTMLTAGGCAGVASWVVCYPLDVIKSRLQGQGDASPKYAGIVDCFKKSVQEEGLPVLWRGLGTAVSRAFLVNGAIFAAYELALRCFFPETPDQVLNTAG*

Protein Length: 275

Fln nts: CGTTTGCAGCAGCCGCAGCCACCGATGGCGGCGCCGACCTCGGCTCTGAGGATGGCGCAGAGTATCGTGAAATCACAAGGCCCTTTGGGTCTATACAGGGGCATGGGGCCTCCTCTCGCCACAGTTGCCTTGCAGAACGCTGTAGCATTCCAAGTTTATGCCGTTTTATCTCGCGCTTTTGATGGTAACCGCAAGAAGAATGAGCCACCATCATATAAAAGTGTAGCACTGGCAGGTATAGGAGCAGGGACTATACAAACTGCAATTCTTACACCTGTGGAGCTGGTCAAGATTCGCTTACAAGTTAACACAGCTCGAAACCCTACTTCAAGCTCTGTTAAGATTGGTCCCATCAAGGAGGCAAAAGGCATCATACAAAGAGAAGGGTTGAAAGGCCTTTATAGAGGACTTGGTATTACTGTACTTCGTGATGCTCCTGCTCATGGTGTCTACTTCTGGACATATGAATATAGTAGAGAATGGCTTCACCCAGGTTGTCGGAAAAGTGCAGAGGAAAGTTTATTAACAATGCTCACAGCAGGCGGTTGTGCAGGGGTGGCAAGTTGGGTAGTTTGCTATCCATTGGATGTGATTAAATCCAGACTTCAAGGACAAGGTGATGCATCTCCCAAGTACGCTGGGATTGTTGACTGCTTCAAAAAGAGTGTACAAGAAGAAGGACTTCCAGTCCTCTGGCGAGGCCTTGGAACAGCTGTGTCACGTGCTTTTTTGGTAAATGGAGCTATATTTGCAGCATATGAACTCGCATTGCGTTGTTTCTTCCCAGAGACACCGGATCAGGTGCTTAACACTGCTGGTTAG___CTCTGCGAGGGACAGAAACACTAAATTTCAAATGATCTTCATGGGGAAGAATGATAATCAGTGTATGGAATACAGTGTATTCTTTACTGTGTGACGATCCTTTTAGTAATGTAAAATCTTGTACTTTCATATTGTTTAAGAATGAAATATCTATTGCATTTTCCAAAAG

Fln Alignment:

sp_v1.1_unigene3951___QPQPPMAAP---TSALRMAQSIVKSQGPLGLYRGMGPPLATVALQNAVAFQVYAVLSRAFDGNRKKNEPPSYKSVALAGIGAGTIQTAILTPVELVKIRLQVNTARNPT-------------SSSVKI-GPIKEAKGIIQREG-LKGLYRGLGITVLRDAPAHGVYFWTYEYSREWLHPGCRKSAEESLLTMLTAGGCAGVASWVVCYPLDVIKSRLQGQGDASPKYAGIVDCFKKSVQEEGLPVLWRGLGTAVSRAFLVNGAIFAAYEL
B8LPX0______________QPVPPPGQRPRYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFTARGQMEGLV--RTEPGLPLSVGQQVVCGAGAGVAVSFLACPAELIKCRLQAQSALATTEAASVGTAGVTGVAASIKYSGPLDVAKHVLKSEGGARGLFKGLVPTLSREVPGNAAMFGVYEGVKQFMAGG-RDTSQLGRGALLTSGGIAGAAFWLFVYPTDVVKSVIQVDDFRQPKYSGTIDAFRKIAASEGVKGLYKGFGPAMVRSVPANAACFLAYEV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
303	83		16		0.994512
470		26		73	1.0
471	73		26		1.0
473	73	26			1.0
479		26	73		1.0
480	73	26			1.0
481	73			26	1.0
492		71		28	1.0
556			83	16	0.999991
561	16		83		0.999991
564	83		16		0.999991
567		16		83	0.999991
568		16		83	0.999991
773		20		80	0.995493
776	20		80		0.995493
777			20	80	0.995493
780	20			80	0.995493
782			25	75	0.996473
784	25			75	0.996473
785			25	75	0.996473
786		80	20		0.995493
804		10	89		0.999919
848	88	11			0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain