SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3949

Length: 524 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene3949
ATGGGAGAAGATCAAATCCAAGAGGACCAAAAAGAGGCGTGTGATGTGTATGTGAAATGGGAGACATCCAAGGAAGCCTCGGGGAAGTTGATTCAGATATTGAAAATGCCAAGAAATGCAAATCTTGCAGACTTACGAAAGATGATAGAGCCTTATTTGCACAATACAGAGCGAGATTTCATCTTTCTCATGCTCGGGGACCCAAGTGGTGCTCCAGTTTCAAGGGAAAAGGAAGCAGGTGTGCAAGTAACAAGTCTGCCAGACTGTCATAACCAACGCGGCAGCCGCCTGGCATGCCTGCGCCTGCCCATCAAACGCCCGACAATGGTGCATTCTCCTTTCAACTCACTTGAAAATAAATTGCCTCTTTCACCATCTCCAGGTTCTTCTACAGCTACAAATAGCCCCGGTCATGTTTCCAGCTGTGGCTCTGGCTCACCCTTGTTTGCTGGGCGAAGACCAATTACCAAGATGGGAAATTCAAATCACTCAATGGATTCAGGCGGAAAGATTGGACAGAAGGT

Ace file of the UniGene sp_v1.1_unigene3949

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin heavy chain, putative	-	-	8.0e-22	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%
Blast2go	kinesin like protein	-	-	2.21118e-25	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	phragmoplast	GO:0009524	Cellular Component	2.21118e-25	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A5BX96

Fln msg: STOP codon was not found. Distance to subject end: 19 aas, your sequence is shorter than subject: 174 - 980

Fln protein: MGEDQIQEDQKEACDVYVKWETSKEASGKLIQILKMPRNANLADLRKMIEPYLHNTERDFIFLMLGDPSGAPVSREKEAGVQVTSLPDCHNQRGSRLACLRLPIKRPTMVHSPFNSLENKLPLSPSPGSSTATNSPGHVSSCGSGSPLFAGRRPITKMGNSNHSMDSGGKIGQK

Protein Length: 175

Fln nts: ATGGGAGAAGATCAAATCCAAGAGGACCAAAAAGAGGCGTGTGATGTGTATGTGAAATGGGAGACATCCAAGGAAGCCTCGGGGAAGTTGATTCAGATATTGAAAATGCCAAGAAATGCAAATCTTGCAGACTTACGAAAGATGATAGAGCCTTATTTGCACAATACAGAGCGAGATTTCATCTTTCTCATGCTCGGGGACCCAAGTGGTGCTCCAGTTTCAAGGGAAAAGGAAGCAGGTGTGCAAGTAACAAGTCTGCCAGACTGTCATAACCAACGCGGCAGCCGCCTGGCATGCCTGCGCCTGCCCATCAAACGCCCGACAATGGTGCATTCTCCTTTCAACTCACTTGAAAATAAATTGCCTCTTTCACCATCTCCAGGTTCTTCTACAGCTACAAATAGCCCCGGTCATGTTTCCAGCTGTGGCTCTGGCTCACCCTTGTTTGCTGGGCGAAGACCAATTACCAAGATGGGAAATTCAAATCACTCAATGGATTCAGGCGGAAAGATTGGACAGAAGGT

Fln Alignment:

sp_v1.1_unigene3949___IQEDQKEACDVYVKWETSKEASGKLIQILKMPRNANLADLRKMIEPYL-HNTERDFIFLMLGDPSGAPVSREKEAGVQVTSLPDCHNQRGSRLACLRLPIK--RPTMVHSPFNSLENKLPLSPS
A5BX96______________VNEDTGAMTEVYVKWEASKENPGKFITTLKVLRDSSLADLRKLIEMHLGEDKQQAFTFLVLGDPTGAPVPREKEATVRTSKLPICNNQIRGHLACLR-PVKGIQSPAHHLPLSPLENKLPLTPN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
242	37		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain