SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3944

Length: 2588 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3944
GAAGCGACGAAGATGATGTGGGGGAACTTGGCCCATTATTAAGAGAACCTAACATTGAAGCTTTTCAAAATGGTGCTCATAAATTACTCCAAAGCATGCATCTTGTGCATCCTTGTAGCAAGAATGGAATTTCGGTCCCCCATGAGAACAAAAGACAACAAAAGGTTGTACCTTTGCCCTCGTACATTAGAGAGGACAGTATGTCTCACAACATGGATTTCACTGTCAAAGGCAAGAAGAGGGAGGATGACACAATATTTTTAAGACTTCGAATTGCAGACACTGAAGGGCGTATTCGTAATATCTATTTCCCATTTGATGTGGAAGGAGATACAGCCATGAGTGTGGCCAGCGAAATGGTTGCGGAGCTTGACCTTGCTGATCAGGATGTTACAAAGATTGCAGAAATGATTGATGAAGAAATAATGGCTTTGGTACCTGATTGGAATGCAGGGGTAGCAATAGATGATCACCATTCCTTCTATGACCATTACCATTCCTCCGACAAAACAAGTGAAAATTGCTGGTGGAATCATAACGATCATGTCTCCAGTATCTCTTCTCAGAGTTCCCTGTTGGAATACCTGAGGTCTCATTACCACGTTGACAACAAATCAGAAATAGTACCTTGTACTCAAGTTGAATGTGCAGCCATGCATGGCCGCTTTGAAGAAGTCACATTCCAGTTTAATGCAACAGATTTTTATTCATATGTAGAAGAGGAGGCTCCTACAATTTCAAGCGGATCATCAGATGTTCTTCATCACGATTGGGTGAATGGAGAGGATCCAGTTTCACCTAGATCTTTAATATCACATGGTTCAGGGATTAGCAATTTTGAAGATCCCCAAACTTGTCTAATATCCTCAGGTACTGGTAACAAAGAGGATGTAGTTCCAAGCAAACCTGCAAAACCTCCAGAAACTACAGGATATGTTGGTAACTTTGAAGAAAGTTGGAGCAATGGATTGTCTGAAGGGTTCAGTCCTGTCACCAGCTCTGATTGTCCTAGCTTAGTCCCCAATCCTATGCTCCATCCTCAATCACCATCATCAGTCAATATTTTATCTGATGAAGATGAAGATTCCACCAGCAGAGAGTTGCGATTTTTAGTAGTCAAACATCAGAAGGAATTAATGGAACTTCAAAGAAAACATGAGCATTCCCTCTTAGGAATTGAAAATGAATTGAAAAACAGAACACCTTTGGGAACATCTTTAGATATGAAAAAATCCAGTCCTGGAATAAATTTTCAGGATCAGAAATTGAACGTGAATGGGCAGCGAGAGCAGCGGGAAGATGACTCAGGCAGACATGGTACAACTGATAGGGATAAGGAGTTCGTAGCCATGAAACAACTTGGATCCGATGCTCGGGGAACAAGGCTTTCCAGCAGTCCCAGTCATAGATTATCACCGAAGGAACCAGCAGTCAGTTCTGATTTTCCAGGTCCAAGTAAACTTGCAATGCATTCTTCTCCTCCCCCTTCTGTTAGGCCAATTAATAGAAATATAGCACCAAATCAAAGGCTAATGAAAATGCATTCTTTTAGTGGTGTTGACAGTCAGCGTTCTATTAATTCTCTGGCCAAAGAAGTTAGTAGGCAGAAAAATTACCAGACAATTGGAGCATTTCGAACAGGAAATGTCGATGAAAAGAAACATAGTCTTGAGGGGATGAGACGATTTGCATCTACATCTCAGAAATCTTCTTCAAGGAACTGCAAGGAAGGTAAAACTAAATAGTCTGAGAGAACTGAAGCACACTTGTAACATAAATTTATTGCCCTTAGTTTAGAATATAGATTGGATACTGCACTGAAAACTTATCAATTGTATATACGAGCTTTGCCTTCTGGAAGAGGTAATGATTGGTGGTAATGCTATGCAAGGTTCCTTGGAAATTATTCCTTCGCCTTGGCACCTTTATGGTCTCCCAAGAATTTTGGTAGTAAGGGCAGCATTTTGAAATTATACAGAAACAAAGGAAAAATGTATGCATCGTCTTTCATTAGGAGAGGCTGCAACTGCCACGGGCTACTACATTGTTGACATGTACTATGAGTTCACCAGTTCAGCTGATGGTACAATTCAGATGAATTTGTGGGTTATAATCCAAATAAGTGCTTCTTGGCTGGATAGAACCCAATTCCTCACCAGCTTTTCCAGTTAACAGAGAATTCATGTTTTTATGGCCTTTTAATTTTATGTCAAGCTTCTGGTAAAATTTGTCTCTTTGTAGTATTCAAGACTTTACAGAGCATAAGCTATAAAAGAAAATCGGTCTGCAGTGTATTATCGACATCCAATTGTTTTCAGAAATCGATCAATAAGATGAAGGCGGATGCAGACTAGAAGACATGCAAGTATTGCATGTCTAAATGGCTTGATTTTCTCATCATCAATGGCAGCATTAGACGGCTGATTTTTTACTTACCAGAGAAGTGATTACCAATAAACATTTGAGCCTAATAATCATCCATTTCCTTTGTGGACTGATTGCCAAGATTAAGTCATTGACCAATAAACATTCGAGTCAAATGATCATCCATTGCCTCTATTGCCTTTGTGAACTGACAGACTAGATTC

Ace file of the UniGene sp_v1.1_unigene3944

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase, putative (EC:2.7.11.25)	-	-	1.0e-37	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	wnk1 (with no lysine 1) kinase protein kinase protein serine threonine kinase	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	60%
Blast2go	circadian rhythm	GO:0007623	Biological Process	60%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSG2

Fln msg: your sequence is shorter than subject: 581 - 885

Fln protein: SDEDDVGELGPLLREPNIEAFQNGAHKLLQSMHLVHPCSKNGISVPHENKRQQKVVPLPSYIREDSMSHNMDFTVKGKKREDDTIFLRLRIADTEGRIRNIYFPFDVEGDTAMSVASEMVAELDLADQDVTKIAEMIDEEIMALVPDWNAGVAIDDHHSFYDHYHSSDKTSENCWWNHNDHVSSISSQSSLLEYLRSHYHVDNKSEIVPCTQVECAAMHGRFEEVTFQFNATDFYSYVEEEAPTISSGSSDVLHHDWVNGEDPVSPRSLISHGSGISNFEDPQTCLISSGTGNKEDVVPSKPAKPPETTGYVGNFEESWSNGLSEGFSPVTSSDCPSLVPNPMLHPQSPSSVNILSDEDEDSTSRELRFLVVKHQKELMELQRKHEHSLLGIENELKNRTPLGTSLDMKKSSPGINFQDQKLNVNGQREQREDDSGRHGTTDRDKEFVAMKQLGSDARGTRLSSSPSHRLSPKEPAVSSDFPGPSKLAMHSSPPPSVRPINRNIAPNQRLMKMHSFSGVDSQRSINSLAKEVSRQKNYQTIGAFRTGNVDEKKHSLEGMRRFASTSQKSSSRNCKEGKTK*

Protein Length: 582

Fln nts: GAAGCGACGAAGATGATGTGGGGGAACTTGGCCCATTATTAAGAGAACCTAACATTGAAGCTTTTCAAAATGGTGCTCATAAATTACTCCAAAGCATGCATCTTGTGCATCCTTGTAGCAAGAATGGAATTTCGGTCCCCCATGAGAACAAAAGACAACAAAAGGTTGTACCTTTGCCCTCGTACATTAGAGAGGACAGTATGTCTCACAACATGGATTTCACTGTCAAAGGCAAGAAGAGGGAGGATGACACAATATTTTTAAGACTTCGAATTGCAGACACTGAAGGGCGTATTCGTAATATCTATTTCCCATTTGATGTGGAAGGAGATACAGCCATGAGTGTGGCCAGCGAAATGGTTGCGGAGCTTGACCTTGCTGATCAGGATGTTACAAAGATTGCAGAAATGATTGATGAAGAAATAATGGCTTTGGTACCTGATTGGAATGCAGGGGTAGCAATAGATGATCACCATTCCTTCTATGACCATTACCATTCCTCCGACAAAACAAGTGAAAATTGCTGGTGGAATCATAACGATCATGTCTCCAGTATCTCTTCTCAGAGTTCCCTGTTGGAATACCTGAGGTCTCATTACCACGTTGACAACAAATCAGAAATAGTACCTTGTACTCAAGTTGAATGTGCAGCCATGCATGGCCGCTTTGAAGAAGTCACATTCCAGTTTAATGCAACAGATTTTTATTCATATGTAGAAGAGGAGGCTCCTACAATTTCAAGCGGATCATCAGATGTTCTTCATCACGATTGGGTGAATGGAGAGGATCCAGTTTCACCTAGATCTTTAATATCACATGGTTCAGGGATTAGCAATTTTGAAGATCCCCAAACTTGTCTAATATCCTCAGGTACTGGTAACAAAGAGGATGTAGTTCCAAGCAAACCTGCAAAACCTCCAGAAACTACAGGATATGTTGGTAACTTTGAAGAAAGTTGGAGCAATGGATTGTCTGAAGGGTTCAGTCCTGTCACCAGCTCTGATTGTCCTAGCTTAGTCCCCAATCCTATGCTCCATCCTCAATCACCATCATCAGTCAATATTTTATCTGATGAAGATGAAGATTCCACCAGCAGAGAGTTGCGATTTTTAGTAGTCAAACATCAGAAGGAATTAATGGAACTTCAAAGAAAACATGAGCATTCCCTCTTAGGAATTGAAAATGAATTGAAAAACAGAACACCTTTGGGAACATCTTTAGATATGAAAAAATCCAGTCCTGGAATAAATTTTCAGGATCAGAAATTGAACGTGAATGGGCAGCGAGAGCAGCGGGAAGATGACTCAGGCAGACATGGTACAACTGATAGGGATAAGGAGTTCGTAGCCATGAAACAACTTGGATCCGATGCTCGGGGAACAAGGCTTTCCAGCAGTCCCAGTCATAGATTATCACCGAAGGAACCAGCAGTCAGTTCTGATTTTCCAGGTCCAAGTAAACTTGCAATGCATTCTTCTCCTCCCCCTTCTGTTAGGCCAATTAATAGAAATATAGCACCAAATCAAAGGCTAATGAAAATGCATTCTTTTAGTGGTGTTGACAGTCAGCGTTCTATTAATTCTCTGGCCAAAGAAGTTAGTAGGCAGAAAAATTACCAGACAATTGGAGCATTTCGAACAGGAAATGTCGATGAAAAGAAACATAGTCTTGAGGGGATGAGACGATTTGCATCTACATCTCAGAAATCTTCTTCAAGGAACTGCAAGGAAGGTAAAACTAAATAG___TCTGAGAGAACTGAAGCACACTTGTAACATAAATTTATTGCCCTTAGTTTAGAATATAGATTGGATACTGCACTGAAAACTTATCAATTGTATATACGAGCTTTGCCTTCTGGAAGAGGTAATGATTGGTGGTAATGCTATGCAAGGTTCCTTGGAAATTATTCCTTCGCCTTGGCACCTTTATGGTCTCCCAAGAATTTTGGTAGTAAGGGCAGCATTTTGAAATTATACAGAAACAAAGGAAAAATGTATGCATCGTCTTTCATTAGGAGAGGCTGCAACTGCCACGGGCTACTACATTGTTGACATGTACTATGAGTTCACCAGTTCAGCTGATGGTACAATTCAGATGAATTTGTGGGTTATAATCCAAATAAGTGCTTCTTGGCTGGATAGAACCCAATTCCTCACCAGCTTTTCCAGTTAACAGAGAATTCATGTTTTTATGGCCTTTTAATTTTATGTCAAGCTTCTGGTAAAATTTGTCTCTTTGTAGTATTCAAGACTTTACAGAGCATAAGCTATAAAAGAAAATCGGTCTGCAGTGTATTATCGACATCCAATTGTTTTCAGAAATCGATCAATAAGATGAAGGCGGATGCAGACTAGAAGACATGCAAGTATTGCATGTCTAAATGGCTTGATTTTCTCATCATCAATGGCAGCATTAGACGGCTGATTTTTTACTTACCAGAGAAGTGATTACCAATAAACATTTGAGCCTAATAATCATCCATTTCCTTTGTGGACTGATTGCCAAGATTAAGTCATTGACCAATAAACATTCGAGTCAAATGATCATCCATTGCCTCTATTGCCTTTGTGAACTGACAGACTAGATTC

Fln Alignment:

sp_v1.1_unigene3944___DDVGELGPLLREPNIEAFQNGAHKLLQSMHLVHPCSKNGISVPHENKRQQKVVPLPSYIREDSMSHNMDFTVKGKKREDDTIFLRLRIADTEGRIRNIYFPFDVEGDTAMSVASEMVAELDLADQDVTKIAEMIDEEIMALVPDWNAGVAIXXXXXXXXXXXXXXKTSENCWWNHNDHVXXXXXXXXLLEYLRSHYHVDNKSEIVPCTQVECAAMHGRFEEVTFQFNATDFYSYVEEEAPTISSGSSDVLHHDWVNGEDPVSPRSLISHGSGISNFEDPQTCLISSGTGNKEDVVPSKPAKPPETTGYVGNFEESWSNGLSEGFSPVTSSDCPSLVPNPMLHPQSPSSVNILSDEDEDSTSRELRFLVVKHQKELMELQRKHEHSLLGIENELKNRTPLGTSLDMKKSSPGINFQDQKLNVNGQREQREDDSGRHGTTDRDKEFVAMKQLGSDARGTXXXXXXXXXXXXKEPAVSSDFPGPSKLAMHSSPPPSVRPINRNIAPNQRLMKMHSFSGVDSQRSINSLAKEVSRQKNYQTIGAFRTGNVDEKKHSLEGMRRFASTSQKSSSRNCKE
C0PSG2______________DDVGELGPLLREPNIEAFQNGGHKAHQSIHFVHPCSKNGISVHYENKKQRRVVPLPSYFREDSMSHNMDFTVKGKKREDDTIFLRLRIADTEGRIRNIYFPFDVEGDTAMSVASEMVAELDLADQDVTKIAEMIDEEILALVPDWKAGVAIDDHHYFYDHDNSTYETNEACWWNHNDHVSSISSQSSLLEYLRSHYYVDNKSEIVPCTRVECAAMHGRFEEVTFQVNATDFSSYVEEEAPTISSGSSDVLHHDWVNGEDPVSPGSFMSHGSGASNFEDPQSCLISSVTGNKEDVVPSKPAKPPEKTGYVDNFEESWSHGLSEGFSPVTHSDCLSSVHKPMLHPQSPSSVKILSDEDEDSTSRELRLLAVKHQKELMELQRKHEHSLLEIENELKNTTPLRSPLDKKKSSPGINFQDQKLNVNGQQEHREDDSVRHGTIGRDKEFAAMKQLGSDVRGTRLSSNASHRISPKDPAVSSDFPGPRKLAMHSSPTPPVRPINRNIAPNQRLMKMHSFSGVDSQHSINSLAREVSRQRNYQTIGAFRTGNLDDKKHSGEGLRRFPSISQKSSSRNCKE

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
528		57		28	1.0
530			85	14	0.993533
535	71		28		1.0
577		85	14		0.993533
581			14	85	0.993533
582	14		85		0.993533
583		14	85		0.993533
584	85	14			0.993533
585	85			14	0.993533
587	85		14		0.993533
588		85	14		0.993533
592	71		14		0.984337
593	14		71	14	0.984337
594		14	85		0.993533
595	14			85	0.993533
675	87	12			0.992554
677	87			12	0.992554
678	87	12			0.992554
681		87	12		0.992554
684	87	12			0.992554
687		87	12		0.992554
689	87			12	0.992554
693		14		85	0.993533
695	85	14			0.993533
919		80		20	0.995493
920		80	20		0.995493
921			20	80	0.995493
922		80	20		0.995493
983		20	80		0.995493
986		20		80	0.995493
987		80	20		0.995493
988	80			20	0.995493
990	20			80	0.995493
995		20		20	0.99255
997		80	20		0.995493
999		25		25	0.995533
1002		80		20	0.995493
1003		20		20	0.99255
1211		66	33		1.0
1693	87			12	0.992554
1694		12		87	0.992554
1695	12			87	0.992554
1712	72			27	1.0
1713	72		18	9	0.999994
1715		18	9	72	0.999994
1720			18	72	0.999994
1721			18	81	0.999994
1724	72		9	18	0.999994
1726			81	18	0.999994
1727	81	18			0.999994
1779	90	10			0.90298
2065	90		10		0.90298
2076	88		11		0.923564
2240	25	75			0.996473
2259		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain