SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3935

Length: 1984 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3935
CGTCGTGACCTTGGATGGGGAGGAATTTGAGCGAGTTTGCTCTGTTCGGCCGTCTGTCAGGGATACATGATCATTGATAGGGTTGAGGATTTTAGAGTTTCAGTTAATTGAATTTTGTCTTCGTAGAATGGAATCCGCCATGTCTGCGCACAGGGGAGCAATGGCTCCCTGTTTAAGTAACCAATCTAAAGGTATCAATGCTAATTATGTTGCAGTTGGGTTGGGTCGGGTTTCTTTATCGTCAAATAGCCAAACTGTTTCTCGGCTAGTGTTTTCCGATCTGAATGGCGTCCAATCTTATGGTGGAAAGGCTCGGCCGTATTGTGGGATGAAAAATAAATTAGAGAAACAGAAATTGAAGCATCTTTCTTCTGCGTCTGATGGGTGTTTATCAGAAAAGAAGAGGATGAAGCTATTACAGTTCTTATCCAAAGATCTTTCTGTGCTAACAACTACGATCCCCGAAGATGCGGATGTATCCCTTACAGATCAAGTCAGAGCAGAAATTCTCTCGGATGCCGTGAGTGCGCTGATGAGGCAATTAGAACAAGCCAAAGCAGAGCGCAAAGAGAGGAAAAAGCAGCTGAAAGCCCAGAAAAAGGCATTGAAATTAGCTGAAAAGCAAAGGAAAAACAAGGGTTGTTGTGAAGACTCGTCGTTCGACCATGGGAGGGAGGTGGTCGACATGGCTCTGCTTCATCCGACAGAGCAGATTGGACGGATTTTAGAGCCCCCTGAGCCAAACCAGTCGGTGTTGGTAGAAAATCCTCCAAATGTAGCGGAGGTTAATGAAGATGAAAAGGCTCTGCATGTGGAATTTGCAGAGGCTAGTGATAGATTGGGGTTGAATTCAGCTGTGGGTATCCCAATGGAGGAGGCGAAGAGTGTGATAAAAGTTTGTATGGGTGGGAAGTGCAAGAAGTCAGGATCTGAGATGATGTTGGAGGCGTTTGAAGAGATAATAAGTAAATCAGGGATGGGTTGTGAGGTTGAGGCAGTGGGGTGCAAGTGCATGGGCAAGTGCCGAAATGCCCCAAATATTCGAGTGCAGACAGAGGAAGATGGCTTTCATGGCGGCAAAGGAGTAGTGCATATGGGTGTTGACATCGGGGATGTGGATCTGATTCTTGCTCAGCACTTTGGGTTCAATGTGAAACAACCTCAACCACCAAAAGAAAGCGAAACAGCCAATGGTCGTTTATATTAAATTGGAGATCAAGGAAGCCCAAAGATTAGGGGCCGCAGTTACTGTACAGTTATCCTACCACCCTGTAAATAGGTTTGTTTTCAGCTGTTCTTCTGATTATTTCAGAAGTCAAGCAATTTGTTGGCTTGAAAGACTATCAGTAATTAGCTTAGCTTACATTACAAAACAGTTAGTTTGGTCCGAATTGATCAAATTATTGTGCAGTTCACTTATCAGAGGAGAGGAATCCTGTAAAGAAATCAAACAAGTTTTTTGGATGAATTCAGTACTGTTACAAACAGGTTTTTTGGTTGAATTCAGTACTGTTACAGATCTCTCTTTTTTATTATTCAATGTGATTAACGCATCCCATCCAATCAGATGATATACAGTGTGACGTGAATGGACATTTCCACTACAGCGATGTGCAACTAATACCTATATTCCTATATTCATGAATTGTCCTGGATGCGATACAGCGATGTGCAACTAATATAGGAAATTGTCCTGGATGCGTTATTCATGGGTCTGTCGCCGTCACTATTTGCGTGAATTAAATTTTATTTTATTCGACATAATAGGCTACATCCATTTATATATCTGGTTGATATAAATTATAAAATCAGATATTTGGTTTATAGGTGAAGATTAAATGACGGTACGTGTATGAATAAACAATTCAGCAAAAGAGTTTAGAGGACATTTTGTTGCCCGTGGCATATCCCGAGGATAAAGGGCATCAATACATTGGCGTATGCTAAAGAGAGTTGATATGGAATATTCTATATGCTTAATAAT

Ace file of the UniGene sp_v1.1_unigene3935 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	soluble diacylglycerol acyltransferase	-	-	6.0e-13	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	protein	-	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMT1

Fln msg:

Fln protein: MESAMSAHRGAMAPCLSNQSKGINANYVAVGLGRVSLSSNSQTVSRLVFSDLNGVQSYGGKARPYCGMKNKLEKQKLKHLSSASDGCLSEKKRMKLLQFLSKDLSVLTTTIPEDADVSLTDQVRAEILSDAVSALMRQLEQAKAERKERKKQLKAQKKALKLAEKQRKNKGCCEDSSFDHGREVVDMALLHPTEQIGRILEPPEPNQSVLVENPPNVAEVNEDEKALHVEFAEASDRLGLNSAVGIPMEEAKSVIKVCMGGKCKKSGSEMMLEAFEEIISKSGMGCEVEAVGCKCMGKCRNAPNIRVQTEEDGFHGGKGVVHMGVDIGDVDLILAQHFGFNVKQPQPPKESETANGRLY*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGATGGGGAGGAATTTGAGCGAGTTTGCTCTGTTCGGCCGTCTGTCAGGGATACATGATCATTGATAGGGTTGAGGATTTTAGAGTTTCAGTTAATTGAATTTTGTCTTCGTAGA_-_ATGGAATCCGCCATGTCTGCGCACAGGGGAGCAATGGCTCCCTGTTTAAGTAACCAATCTAAAGGTATCAATGCTAATTATGTTGCAGTTGGGTTGGGTCGGGTTTCTTTATCGTCAAATAGCCAAACTGTTTCTCGGCTAGTGTTTTCCGATCTGAATGGCGTCCAATCTTATGGTGGAAAGGCTCGGCCGTATTGTGGGATGAAAAATAAATTAGAGAAACAGAAATTGAAGCATCTTTCTTCTGCGTCTGATGGGTGTTTATCAGAAAAGAAGAGGATGAAGCTATTACAGTTCTTATCCAAAGATCTTTCTGTGCTAACAACTACGATCCCCGAAGATGCGGATGTATCCCTTACAGATCAAGTCAGAGCAGAAATTCTCTCGGATGCCGTGAGTGCGCTGATGAGGCAATTAGAACAAGCCAAAGCAGAGCGCAAAGAGAGGAAAAAGCAGCTGAAAGCCCAGAAAAAGGCATTGAAATTAGCTGAAAAGCAAAGGAAAAACAAGGGTTGTTGTGAAGACTCGTCGTTCGACCATGGGAGGGAGGTGGTCGACATGGCTCTGCTTCATCCGACAGAGCAGATTGGACGGATTTTAGAGCCCCCTGAGCCAAACCAGTCGGTGTTGGTAGAAAATCCTCCAAATGTAGCGGAGGTTAATGAAGATGAAAAGGCTCTGCATGTGGAATTTGCAGAGGCTAGTGATAGATTGGGGTTGAATTCAGCTGTGGGTATCCCAATGGAGGAGGCGAAGAGTGTGATAAAAGTTTGTATGGGTGGGAAGTGCAAGAAGTCAGGATCTGAGATGATGTTGGAGGCGTTTGAAGAGATAATAAGTAAATCAGGGATGGGTTGTGAGGTTGAGGCAGTGGGGTGCAAGTGCATGGGCAAGTGCCGAAATGCCCCAAATATTCGAGTGCAGACAGAGGAAGATGGCTTTCATGGCGGCAAAGGAGTAGTGCATATGGGTGTTGACATCGGGGATGTGGATCTGATTCTTGCTCAGCACTTTGGGTTCAATGTGAAACAACCTCAACCACCAAAAGAAAGCGAAACAGCCAATGGTCGTTTATATTAA___ATTGGAGATCAAGGAAGCCCAAAGATTAGGGGCCGCAGTTACTGTACAGTTATCCTACCACCCTGTAAATAGGTTTGTTTTCAGCTGTTCTTCTGATTATTTCAGAAGTCAAGCAATTTGTTGGCTTGAAAGACTATCAGTAATTAGCTTAGCTTACATTACAAAACAGTTAGTTTGGTCCGAATTGATCAAATTATTGTGCAGTTCACTTATCAGAGGAGAGGAATCCTGTAAAGAAATCAAACAAGTTTTTTGGATGAATTCAGTACTGTTACAAACAGGTTTTTTGGTTGAATTCAGTACTGTTACAGATCTCTCTTTTTTATTATTCAATGTGATTAACGCATCCCATCCAATCAGATGATATACAGTGTGACGTGAATGGACATTTCCACTACAGCGATGTGCAACTAATACCTATATTCCTATATTCATGAATTGTCCTGGATGCGATACAGCGATGTGCAACTAATATAGGAAATTGTCCTGGATGCGTTATTCATGGGTCTGTCGCCGTCACTATTTGCGTGAATTAAATTTTATTTTATTCGACATAATAGGCTACATCCATTTATATATCTGGTTGATATAAATTATAAAATCAGATATTTGGTTTATAGGTGAAGATTAAATGACGGTACGTGTATGAATAAACAATTCAGCAAAAGAGTTTAGAGGACATTTTGTTGCCCGTGGCATATCCCGAGGATAAAGGGCATCAATACATTGGCGTATGCTAAAGAGAGTTGATATGGAATATTCTATATGCTTAATAAT

Fln Alignment:

sp_v1.1_unigene3935___MESAMSAHRGAMAPCLSNQSKGINANYVAVGLGRVSLSSNSQTVSRLVFSDLNGVQSYGGKARPYCGMKNKLEKQKLKHLSSASDGCLSEKKRMKLLQFLSKDLSVLTTTIPEDADVSLTDQVRAEILSDAVSALMRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNKGCCEDSSF-----DHGREVVDMALLHPTEQIGRILEPPEPNQSVLVENPPNVAEVNEDEKALHVEFAEASDRLGLNSAVGIPMEEAKSVIKVCMGGKCKKSGSEMMLEAFEEIISKSGMGCEVEAVGCKCMGKCRNAPNIRVQTEEDGFHGGKGVVHMGVDIGDVDLILAQHFGFNVKQPQPPK
B8LMT1______________MESAMSARSGAMTSCLSNESRGINTNYVAVGISRVSLSSNRQTVSRLVFSDRNPVKSCGGTAQPYCGMKNKLEKQKLKHLSALSDGCLSEKKRMKLLQLLSKDLSVLSA-FPADANVSLTEQVRGEILSDAVNVLMRQLEQAKAERKERKQQLKAQKKALKLAEKQRKNEGRCPESSSSSCSSNHESYVVEMALLHPTQQIGRILEAPEPSPLVLIESPPNVAEVNGDEKALHVEFAEASDRLGLNSGVDIPLQEANSVIKVCMGGKCKKSGSEMLLEALEERISKLGLGCEVEAVGCKCMGKCRNAPNVRVQTEEDGFHGGKGEVHMGVDIGDVDLILAQHFGLNLQLPQQPK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
282	75		25		0.996473
300		25		75	0.996473
1652		8		66	1.0
1955	10	90			0.90298
1960	11	88			0.923564
1961	77	22			0.999999
1962	77	22			0.999999
1967	12	12	12		0.962769
1968	12	87			0.992554
1969		71	14		0.984337
1972		85	14		0.993533
1973	14	85			0.993533
1976			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain