SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3917

Length: 1348 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3917 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	integral membrane family protein	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	integral membrane family protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNB3

Fln msg: W1: There is no M at the beginning,

Fln protein: ALRSRSRVRISPNSPALKLPIVCPKKASLQAEKLFKHPKVYQ*QGLTPI*ELPGVLSEAVSVFHLSPPTWESAILCNTLIFLAGSPLLFVGLTTPGIAAAFLLGSLSWRAFGSRGFFVVLIYYLIGTGATKLKLKQKEAEGVAEKRKGRRGPSSVFGSGAAGCLCALGSIFGLGGIAFRNLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLITNLSVVPRGTEGAVSIEGTLAGLVASILLAYTCCLMGQVDNAGAIICVISSQLANVLESQIGASLQDKEGFKWLNNDVVNVINISSGTAFAMLLKYFFG*

Protein Length: 314

Fln nts: ATGGGGAAACCAGCCTATGAGCGCTAGTTGGGGTATCAATTGCAATAGTTCTCTCTGGGGCTCGTCACGGTGCTCTAAGCTCTTCGTTCCAGGTCGCGAGTTCGAATCTCTCCCAATTCCCCTGCACTGAAACTTCCAATTGTATGCCCTAAGAAAGCTTCTTTACAGGCGGAAAAATTATTTAAACACCCTAAGGTTTACCAATGACAGGGGTTAACGCCAATATAGGAATTGCCGGGTGTTTTGTCTGAGGCAGTTAGCGTATTTCATTTGTCTCCACCAACATGGGAATCCGCTATACTCTGCAACACTCTCATATTTTTGGCGGGTTCTCCGCTACTTTTCGTCGGTCTGACAACTCCTGGCATCGCGGCCGCGTTCCTGCTGGGGAGCTTATCATGGAGAGCGTTTGGAAGCAGAGGGTTTTTCGTCGTCCTTATTTATTATCTCATTGGTACAGGAGCTACAAAACTGAAGCTAAAACAGAAAGAGGCTGAAGGAGTTGCAGAGAAAAGGAAAGGAAGACGAGGGCCAAGCAGTGTTTTTGGTTCTGGAGCTGCTGGATGCTTATGTGCTTTAGGCTCCATTTTTGGGTTAGGTGGGATAGCATTCAGAAATCTTTGGCAGCTGGGATTTGTTGCAAGTTTTTGCACAAAGCTTAGTGATACAGTTTCCAGTGAGATTGGGAAGGCCTATGGTAAAACAACGTACCTTATCACAAACCTTTCAGTAGTTCCCAGGGGAACAGAAGGAGCTGTTAGTATCGAAGGAACTCTTGCTGGGTTAGTTGCATCCATACTACTTGCATATACTTGCTGTCTTATGGGTCAGGTAGATAATGCCGGAGCTATAATTTGTGTTATTTCTTCTCAGCTGGCAAATGTTCTTGAAAGTCAAATTGGCGCTTCTTTGCAAGACAAAGAAGGTTTTAAATGGCTTAATAATGATGTTGTCAACGTTATCAACATTTCGAGTGGAACTGCATTTGCTATGTTGCTTAAATATTTTTTTGGCTAA___CAAAGTTGGAAAGTATAATATCGTCTCCATCTTGGGCCTCCATTGAAAGTACAGATTAAACTGCATTTGAATCGATGTGTCTGAATTAATATTTTTCTTATATTTCGAAATGGCAAGCTGCTCACATGTAACTATTTCTGTATTATTTTTAAAAGCTCAGTCGTATATTTTATTTTCCAGATCTCATATGAATCAATGCCTTTATAAGGCTTAGGCCCCTGGGCTGCTTTGAAGAGTTACGAAATTGTGGTATATCTAAAATAAAATTTGTGTAGACATCGGTCTCACAGACATATTTTGAATCAATATCAAAATTTAATGATTTTTTCAC

Fln Alignment:

sp_v1.1_unigene3917___KASLQA-EKLFKHPKVYQ*QGLTPI*------ELPGVLSEAVSVFHLSPPTWESAILCNTLIFLAGSPLLFVGLTTPGIAAAFLLGSLSWRAFGSRGFFVVLIYYLIGTGATKLKLKQKEAEGVAEKRKGRRGPSSVFXXXXXXXXXXXXSIFGLGGIAFRNLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLITNLSVVPRGTEGAVSIEGTLAGLVASILLAYTCCLMGQVDNAGAIICVISSQLANVLESQIGASLQDKEGFKWLXXXXXXXXXISSGTAFAMLLKYFFG
A9NNB3______________KPSIYALRKLLRRRKVYSNTRRLPMAAVNAELQLPGVLSNAVSAFQLFPPTWESAILSNTLIFLAGSPLLFVGLTTPGIGAAFLLGSLSWRAFGSRGFFAVVIYYLIGTGATKLKLKQKEAEGVAEKRKGRRGPSSVIGSGAAGCLCALGSIFGLGGIAFGNLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLITNLSVVPRGTEGAVSIEGTLAGLVASILLAYTCCLMGQVDGVGAIICVISSQLANIFESQIGASFQDKEGFKWLNNDVVNVINISSGTAFAMLLKYFLG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
942		86		13	0.999973
1099	10			90	0.90298
1100		80	20		0.999996
1113	11	88			0.923564
1141			28	71	1.0
1178		80		20	0.995493
1259		40		60	1.0
1289		20	80		0.995493
1290		60	40		1.0
1291	40	60			1.0
1293	20	40	40		1.0
1294	80			20	0.995493
1295			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain