SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3907

Length: 2424 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3907
GAAAAGTGGTGCGGCTCCAGTGTATTTTTTGACAGTAGGGGAGCGTGGCATTGTTCGTATATGGTATTCAGAAGGTGCTCTGTGCTTATATGAGCAGAAGTCCTCGGATGCAATAATTAGCTCTGACAAAGACGAGTTGAAGGGAGGCTTTGTATCTGCTGTTCTACTACCCCTCACTCAAGGAGTGATGTGTGTTACTGCTGATCAGCGTTTTCTCTTTTACAATCTGGATGAAAGCGATGAAGGAAAATGTGATTTAAAGGTCAGCAAGCGTCTTATAGGTTACAATGAGGAGATAGTGGACTTGAAATTTCTTGGGGACGAGGAGAAGTTTCTTGCAGTTGCAACAAATCTGGAGCAGGTGCGCATGTATGACCTTTCATCGATGACATGTGTATATGAGTTGCCAGGACACACAGACATAGTTCTTTGTCTAGATACTGTTGTTTTTTCTGGACATATTCTGTTAGCTTCTGGGTCCAAAGATCACACAGTAAGAATTTGGGATACAGAGAGCAAATCCTGCATATGTGTAGCAGCAGGGCACATGGGTGCTGTAGGAGCTGTTGCCTTCTCAAAAAAAGCTAAGAACTTCTTTGTGACTGGGAGCAGTGATCGCACAATCAAAGTATGGAGTTTTGCTAGCGTACTAGATTTTGGTGATATTAGTAAGTCAATCAAGCTTTCATCACAGGCTGCAGTCGCAGCTCATGATAAGGACATCAATTCTGTGGCTGTTGCTCCAAATGATAGTCTTATCTGTACTGGTTCACAGGATCGAACAGCTCGTATATGGAGATTACCAGATCTGGTACCAGTACTAGTGCTAAGAGGCCACAAAAGAGGAGTTTGGTGTGTGGAATTTTCGCCTGTAGATCAATGTGTGATGACAGCATCTGGTGACAAGACAATCAAAATATGGGCATTATCGGATGGCTCTTGCTTGAAGACATTTGAAGGTCATACTGCAAGTGTACTGCGAGCTTCCTTCCTCACTCGTGGGACACAGTTTGTTTCTTCTGGTGCAGATGGCTTGTTGAAATTGTGGACAATCAAGTCCAATGAATGTATTGCAACATTTGATCAGCACGAAGACAAGATCTGGGCAATGGCTGTGGGCAAGAAAACAGAAATGCTGGCAACAGGTGGCAGTGATTCCCTTGTGAATTTGTGGCATGATTGCACTACCACAGATGAGGAGGAGGCTCTTCTCAAAGAGGAGGAAGCGGCATTGAAAGACCAGGAATTACTAAATGCTCTTGCAGATACCGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGACCTTATAAGCTCCTTAATGTCTTCACTGAACTGTACAGCAAAGGACATGCCCAGGATCAGATACAGAAAGTGATACGTGAACTAGGAAAAGAAGAGCTAAGATTACTTTTAGAATATGTGCGAGAATGGAATACAAAGCCAAAATTTGCCCATGTTGCCCAGTTTGTATTATTTCAACTTTTCAACGTCCTTCCTCCAAAGGAGATCATTGAGGTACAAGGTATTAGTGAACTTTTGGAGGGTCTTATACCATATGCACAGCGACATTATAGCAGGCTAGATAGACTTATGAGAAGCACTTTTTTGTTGGATTACACTCTTTCATCAATGTCAGTTCTCTCTCCCACGGAGACAGATTTGTCATCATCTAATTTATTAGCTAGAACAGCTGATCCACCGCATGCACAGATTGATCAGTTTCACCCAACCCATTTCCCTGAGCCAAATTTGACTCCTAGACAGTCTCTTTTAGATTCAGGGAATACAGATTCTGTGGAAGTCACAGCACGACGAGCCAAGAAGAAAAGAGTGTCAGGTAATGATTCAGAGAAAACAACTGTTGCTGAAGTTAAAATTGGTGACATAGAGAATGCGTTTGATGAGCATGACGTGGCAGATCAAGGTTCATCCAGGAAGCATAAACCTGCGAGTTCAAAGAAACGGAAGTCTGTAGCCGTTGGAAATGCCAGAACTAAGAGTATTGCAAGTGGAACTGCAGTCACTATTGCATTACAAGTATAAGGCCTTGTGGATGAAGTTTGATCTACCATTGGTTTTGGAATTAATGTGAACTCTGTAGCAGGATTGCTGAGCAGAATTGCAATTGGGGTTTCATTTAGATGTAGTAATAGTTACTTGTCCAGTTCATAAAAAGAGATATGAGGAACGGCTATACGTTAACTTGAAATTTGTGGGTCAAGGGTTGCGGGTGCAACATAGAGAAATGTGTGCCAACATTTGGTGTACCGAATGTCTTCAATCTGTAAGATTTTCACGGCAGTTGAACTAGTCATAGTGGAATATTATTTAAATGGTGTATTCTAGTCACATTATTTTCAATTTTGATATTATTTGGGCATTTGCTCATTAATTCTGATTTTGACTTGGGGTTT

Ace file of the UniGene sp_v1.1_unigene3907

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U3 small nucleolar RNA-associated protein, putative (EC:2.7.11.7)	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	wd40-repeat protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	embryonic pattern specification	GO:0009880	Biological Process	77%
Blast2go	cell division	GO:0051301	Biological Process	77%
Blast2go	nucleolus	GO:0005730	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	77%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	77%
Blast2go	Small-subunit processome, Utp13	IPR013934	-	77%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	77%
Blast2go	WD40-repeat-containing domain	IPR017986	-	77%
Blast2go	WD40 repeat, conserved site	IPR019775	-	77%
Blast2go	WD40 repeat, subgroup	IPR019781	-	77%
Blast2go	WD40 repeat 2	IPR019782	-	77%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 622 - 314

Fln protein: MCVTADQRFLFYNLDESDEGKCDLKVSKRLIGYNEEIVDLKFLGDEEKFLAVATNLEQVRMYDLSSMTCVYELPGHTDIVLCLDTVVFSGHILLASGSKDHTVRIWDTESKSCICVAAGHMGAVGAVAFSKKAKNFFVTGSSDRTIKVWSFASVLDFGDISKSIKLSSQAAVAAHDKDINSVAVAPNDSLICTGSQDRTARIWRLPDLVPVLVLRGHKRGVWCVEFSPVDQCVMTASGDKTIKIWALSDGSCLKTFEGHTASVLRASFLTRGTQFVSSGADGLLKLWTIKSNECIATFDQHEDKIWAMAVGKKTEMLATGGSDSLVNLWHDCTTTDEEEALLKEEEAALKDQELLNALADTDYVKAIQLAFELRRPYKLLNVFTELYSKGHAQDQIQKVIRELGKEELRLLLEYVREWNTKPKFAHVAQFVLFQLFNVLPPKEIIEVQGISELLEGLIPYAQRHYSRLDRLMRSTFLLDYTLSSMSVLSPTETDLSSSNLLARTADPPHAQIDQFHPTHFPEPNLTPRQSLLDSGNTDSVEVTARRAKKKRVSGNDSEKTTVAEVKIGDIENAFDEHDVADQGSSRKHKPASSKKRKSVAVGNARTKSIASGTAVTIALQV*

Protein Length: 623

Fln nts: GAAAAGTGGTGCGGCTCCAGTGTATTTTTTGACAGTAGGGGAGCGTGGCATTGTTCGTATATGGTATTCAGAAGGTGCTCTGTGCTTATATGAGCAGAAGTCCTCGGATGCAATAATTAGCTCTGACAAAGACGAGTTGAAGGGAGGCTTTGTATCTGCTGTTCTACTACCCCTCACTCAAGGAGTG_-_ATGTGTGTTACTGCTGATCAGCGTTTTCTCTTTTACAATCTGGATGAAAGCGATGAAGGAAAATGTGATTTAAAGGTCAGCAAGCGTCTTATAGGTTACAATGAGGAGATAGTGGACTTGAAATTTCTTGGGGACGAGGAGAAGTTTCTTGCAGTTGCAACAAATCTGGAGCAGGTGCGCATGTATGACCTTTCATCGATGACATGTGTATATGAGTTGCCAGGACACACAGACATAGTTCTTTGTCTAGATACTGTTGTTTTTTCTGGACATATTCTGTTAGCTTCTGGGTCCAAAGATCACACAGTAAGAATTTGGGATACAGAGAGCAAATCCTGCATATGTGTAGCAGCAGGGCACATGGGTGCTGTAGGAGCTGTTGCCTTCTCAAAAAAAGCTAAGAACTTCTTTGTGACTGGGAGCAGTGATCGCACAATCAAAGTATGGAGTTTTGCTAGCGTACTAGATTTTGGTGATATTAGTAAGTCAATCAAGCTTTCATCACAGGCTGCAGTCGCAGCTCATGATAAGGACATCAATTCTGTGGCTGTTGCTCCAAATGATAGTCTTATCTGTACTGGTTCACAGGATCGAACAGCTCGTATATGGAGATTACCAGATCTGGTACCAGTACTAGTGCTAAGAGGCCACAAAAGAGGAGTTTGGTGTGTGGAATTTTCGCCTGTAGATCAATGTGTGATGACAGCATCTGGTGACAAGACAATCAAAATATGGGCATTATCGGATGGCTCTTGCTTGAAGACATTTGAAGGTCATACTGCAAGTGTACTGCGAGCTTCCTTCCTCACTCGTGGGACACAGTTTGTTTCTTCTGGTGCAGATGGCTTGTTGAAATTGTGGACAATCAAGTCCAATGAATGTATTGCAACATTTGATCAGCACGAAGACAAGATCTGGGCAATGGCTGTGGGCAAGAAAACAGAAATGCTGGCAACAGGTGGCAGTGATTCCCTTGTGAATTTGTGGCATGATTGCACTACCACAGATGAGGAGGAGGCTCTTCTCAAAGAGGAGGAAGCGGCATTGAAAGACCAGGAATTACTAAATGCTCTTGCAGATACCGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGACCTTATAAGCTCCTTAATGTCTTCACTGAACTGTACAGCAAAGGACATGCCCAGGATCAGATACAGAAAGTGATACGTGAACTAGGAAAAGAAGAGCTAAGATTACTTTTAGAATATGTGCGAGAATGGAATACAAAGCCAAAATTTGCCCATGTTGCCCAGTTTGTATTATTTCAACTTTTCAACGTCCTTCCTCCAAAGGAGATCATTGAGGTACAAGGTATTAGTGAACTTTTGGAGGGTCTTATACCATATGCACAGCGACATTATAGCAGGCTAGATAGACTTATGAGAAGCACTTTTTTGTTGGATTACACTCTTTCATCAATGTCAGTTCTCTCTCCCACGGAGACAGATTTGTCATCATCTAATTTATTAGCTAGAACAGCTGATCCACCGCATGCACAGATTGATCAGTTTCACCCAACCCATTTCCCTGAGCCAAATTTGACTCCTAGACAGTCTCTTTTAGATTCAGGGAATACAGATTCTGTGGAAGTCACAGCACGACGAGCCAAGAAGAAAAGAGTGTCAGGTAATGATTCAGAGAAAACAACTGTTGCTGAAGTTAAAATTGGTGACATAGAGAATGCGTTTGATGAGCATGACGTGGCAGATCAAGGTTCATCCAGGAAGCATAAACCTGCGAGTTCAAAGAAACGGAAGTCTGTAGCCGTTGGAAATGCCAGAACTAAGAGTATTGCAAGTGGAACTGCAGTCACTATTGCATTACAAGTATAAGGCCTTGTGGATGAAGTTTGATCTACCATTGGTTTTGGAATTAATGTGAACTCTGTAGCAGGATTGCTGAGCAGAATTGCAATTGGGGTTTCATTTAGATGTAGTAATAGTTACTTGTCCAGTTCATAAAAAGAGATATGAGGAACGGCTATACGTTAACTTGAAATTTGTGGGTCAAGGGTTGCGGGTGCAACATAGAGAAATGTGTGCCAACATTTGGTGTACCGAATGTCTTCAATCTGTAAGATTTTCACGGCAGTTGAACTAGTCATAGTGGAATATTATTTAAATGGTGTATTCTAGTCACATTATTTTCAATTTTGATATTATTTGGGCATTTGCTCATTAATTCTGATTTTGACTTGGGGTTT

Fln Alignment:

sp_v1.1_unigene3907___KVSKRLIGYNEEIVDLKFLGDEEKFLAVATNLEQVRMYDLSSMTCVYELPGHTDIVLCLDTVVFSGHILLASGSKDHTVRIWDTESKSCICXXXXXXXXXXXXXFSKKAKNFFVTGSSDRTIKVWSFASVLDFGDISKSIKLSSQAAVAAHDKDINSVAVAPNDSLICTGSQDRTARIWRXXXXXXXXXXRGHKRG-VWCVEFSPVDQCVMTASGDKTIKIWALSDGSCLKTFEGHTAS--VLRASF-LTRGTQFVSSGADGLLKLWTIKSNECIATFDQHEDKIWAMAVGKKTEMLATGG--SDSLVNLW
A9NPC1______________KLKHILTGHKRAVSSVKFSADG-KLLGSASADKSVRIWSAGDGSAKRELQGHAEGVS--DMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQS-NLIVSGSFDETVRIWDVRT-------GKCLKV-----LPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
140	66			33	0.997452
141	66	33			0.997452
143			66	33	0.997452
147		33	66		0.997452
151			33	66	0.997452
154	66		33		0.997452
158	33		66		0.997452
161	33		66		0.997452
401		33		66	1.0
541		85	14		0.993533
542	85		14		0.993533
702	80	20			0.995493
707		80	20		0.995493
709		20	80		0.995493
712		80	20		0.995493
713	80	20			0.995493
718	80	20			0.995493
720		20	80		0.995493
721			80	20	0.995493
722	80	20			0.995493
723	20	80			0.995493
774	40			60	1.0
1532	75		25		0.996473
1533	75			25	0.996473
1535	25		75		0.996473
1536		25		75	0.996473
1537	75	25			0.996473
1540	75		25		0.996473
1544	75	25			0.996473
1548		25		75	0.996473
1549	25			75	0.996473
1735	40	60			1.0
1931	90			10	0.90298
1933		80	20		0.999996
1934	83		16		0.999991
1935	83		16		0.999991
1976	12		87		0.992554
2025	70		30		1.0
2030		88		11	0.923564
2047		77	11	11	0.968132
2048	77	11	11		0.968132
2049	88		11		0.923564
2168	90		10		0.90298
2359			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain