SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3905

Length: 1485 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3905

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	-	-	2.0e-16	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK56

Fln msg:

Fln protein: MAERVYPSNRPGVQNLNGAYTKGQMYGASLPTFRPTPPKKRRNRCCLCCLCLVSFVLFLILLAGIAALVIWIVYKPHQPSFAVSSVQIPKFNVTKDSHLSYEFVLQVDARNPNKKVSFYYDPFSVQISSGDVDLADGSVPGFFHGTKNTTVLKADLKSQNLALSSSDAKNLKSAQSKGKVNLDLDLQTRVRVKIGKWKSHKVRVDIKCKGVSAAISKKASAAASSDTKCKLKLKFKVFKWYL*

Protein Length: 244

Fln nts: TTGGGCCATCATTGGATGTTGATGGGCCGGGTTCGAAACTGAGGGCTTGTGGAGATAAATCCACGCAATACATGAACTGGAATGTCGGTTAAGGAACGCGTTTGCTAGGCCCAGTTGGCTCCGTTCTGCTCTGCTGTTTTGCCCCTTATTTTATTGAAACCCCAGAAACCCCAAGAATGGAATTGTAGTTTAAGCACGGGGGGTTTCCTGCAGACGCATTTCTTGTCTGTGAACTGTTTGTTTTGTGTGAGTAATTTGTGGTGTAATCC_-_ATGGCAGAAAGAGTGTACCCGTCCAACAGACCGGGTGTCCAGAACCTGAATGGCGCATATACCAAGGGCCAGATGTACGGTGCCTCCCTTCCCACCTTCCGCCCTACGCCTCCCAAGAAACGCAGAAACCGTTGCTGTCTCTGCTGCCTCTGCCTCGTCTCGTTCGTCCTCTTCCTGATTTTGCTTGCAGGAATCGCTGCACTGGTTATCTGGATCGTCTACAAGCCTCACCAGCCCAGCTTTGCAGTGAGCTCAGTGCAGATCCCCAAATTCAATGTCACCAAAGATTCCCACCTCAGCTACGAGTTCGTACTGCAAGTAGATGCCAGGAATCCGAACAAGAAGGTAAGCTTTTATTACGATCCCTTTTCTGTGCAAATTTCCTCGGGTGACGTAGATCTAGCAGACGGCTCCGTCCCTGGTTTCTTCCATGGGACCAAGAACACCACAGTCCTGAAAGCTGATCTTAAGAGTCAAAACCTGGCCCTTAGTTCTTCCGATGCCAAGAATCTGAAATCTGCACAGTCAAAGGGGAAAGTCAACCTGGACCTGGATTTGCAGACTCGTGTGAGAGTGAAGATAGGGAAATGGAAGTCTCATAAAGTCAGAGTAGACATCAAGTGCAAAGGAGTCTCTGCTGCCATTTCGAAGAAAGCTTCGGCTGCTGCTAGTTCGGATACTAAATGCAAGCTTAAGCTCAAGTTCAAGGTCTTCAAATGGTACTTGTGA___AACTCAAATGTGATGAGTTTGGCAGATCCGTTGTAGAATTGTTTCAGCTTTACAAGAATAAATTTGTTGCAGGGGGGGCTTAGAACTCAGAAGTAGTGTTATATACCAATGGATCTGTGTGAGATCTGTGGAAGATCTGAGCTAACAGAGACAAGCAGCATCAGAGATGCTGTAATTGGGGATTGCCTGTATTCGTTGAGAACTTGTTTGTTATTTGTGTGGGGGTGTGAAACGGTTATGGTCTGTACAGTGTCCTAACAGTGAAGTTGTGAGGTCTCTGGTTCCGTAGAAAGTAAATACTTTTTTTTGGCAGTGAACAATGTAGAATAGAATAAATGTGGTTGTAAGCAATTTTTTTTCAAAGGAGCAGGTGATCTGATTTAGCTATCAGACTCGCCATCTGTTCATGTAATAACACTATTCATTTAATGATAGGATTATATTCATCTGGTCAAGCAAATTAGCATTTTTGTTAGTCATGGATATC

Fln Alignment:

sp_v1.1_unigene3905___MAERVYPSNRPGVQNLNGAYTKGQMYGASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKPHQPSFAVSSVQIPKFNVTKDSHLSYEFVLQVDARNPNKKVSFYYDPFSVQISSGDVDLADGSVPGFFHGTKNTTVLKADLKSQNLALSSSDAKNLKSAQSKGKVNLDLDLQTRVRVKIGKWKSHKVRVDIKCKGV
A9NK56______________MAERVYPSNRPGVQNLNGAYTKGQMYGAALPTFRPTPPKRRRNRCCLCFLCFVAFLLVLILLAGIAALVIWVIYRPHQPSFTLNSVQIPKFNVTKDSHLSYEFDLQMDAKNPNKKVSFYYDVFSVKVSSGNVDLADGSVPGFFHGTKNTTVLKSNLKSQNLALGASDAKNLKSAQSKGKIKLDVDLQTRVRVKMGKWKSHNVKVDVKCKGV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1417	70		29		1.0
1456	18		81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain