SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3893

Length: 3018 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3893
ATGGGGAGGGGTGAATTGGAAATCTACAAAAGCACTCGTTTTGTCACTACACAAAACAGCTTTTGGTAGTAACCCAGAGGCCTTAGGTCAAGCGGACTTTTGTCATTTCTAGATACTTCTTTCCCTCCATTACTGTGTTCTTATTTTCGCTCTTTGCTTTCCGTCGGTGGTGCTTCAGCAAAACTACATTGCAGAGAGCACCTCTGTGTCATAACATCACGCCGAAGCTGTTAAACACCTTTTGTATTTCGCATTTTCTGCCCCTGAAGCACTTAATCGGGGTCAGTAATGGCGGTCTCAGCACAGAATCTGGACCTCATGGGAGAACGCCAGTACGGCCAAGACGTTCGCACTCAAAATGTGATGGCGTGCCAAGCAGTTGCGAACATCGTCAAGACTTCTCTCGGACCCGTCGGTCTGGACAAGATGTTGGTTGATGACATTGGAGATGTTACAATCACCAATGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCTGCTGCCAAGGTTTTAGTGGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTTGTTATTATTGCTGCTGAGCTACTCAAGCGGGCCAATGACCTTGTTCGGAATAAGATTCACCCTACTTCTATCATCAGTGGTTACAGGCTTGCGATGAGGGAAGCTTGCAAATACATTGACGATAAACTGGCTGTTAAGGTTGAGAAGCTTGGCAAGGATTCTCTTATTAATTGTGCAAAGACAAGCATGTCATCAAAAATCATTGGTTCCGAGAATGATTTTTTTGCAAAAATGGTTGTGGATGCCGTTCAAGCTGTCAAAACTACTAACAACAAGGGTGAAATAAAATATCCAATCAAGGGCGTCAATATTTTGAAGGCACACGGGCAAAGTTCAAAAGATAGTTATCTATTGAATGGGTATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCGGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAGATGGGAGTGCAGGTTCTTGTGAGTGATCCAAGGGAGCTTGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAAGCTGGTGCAAATGTCATATTGACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTTCGCCGTGTACGCAAGGAAGACTTGCGTCATGTAGCCAAGGCAACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATCCATCATTCCTTGGTTATGCGGATGAGGTTGTAGAGGAACGCATTGCTGATGATGATGCCATTTTGATCAAAGGAGCTAAGAGTTCAAGAGCAGTTTCCATAATATTAAGAGGTGCTAATGATTACATGTTGGATGAGATGGAACGGTCTATGCACGATGCCCTGTCCATTGTGAAAAGGACATTGGAGTCTAACATGGTAGTTGCTGGTGGTGGGGCTGTTGAAGCAGCTTTATCAGTCTACTTGGAGAACTTGGCAACCACTTTAGGTTCTAGGGAACAACTTGCTATTGCGGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTTGCTGTGAATGCTGCAAAAGATGCTACAGAGCTAGTTGCTAAACTGCGTGCTTACCATCACAGTGCTCAGACAAAGGCTGACAGAAAACATCTCTCGAACATGGGACTTGATCTTGCAAAAGGAACTGTCAGGAACAATCTCGAAGCAGGTGTCCTCGAACCAGCCATGAGTAAAGTGAAAATTATACAGTTTGCGACCGAGGCTGCTATAACAATTATGCGAATTGATGACATGATAAAGCTTTACAAGGAGGACAATCAAAATGAAGAGGACTAGAGATGTGAGGAATGGAAGTAGTTCCATATCCAGAATTAAGTAGCTACAACACGGTGAGGAATTCAATTTAGTAAATTGAGGCTGGATTATGTGAGATATCAAAGCTGAGTTTATTTCGCAAATTGCCCTCCTAATATTTATAGCATTTCAAGCATATGTAATGCTTTGAAGTTATGATTTGCAACCAACACCACATGAGTTCTTGTGGGTTTTTCTTTTGAATATATACTGTTTAGTGCAGCACTGCCTGCATTGATAGTTTTGTTTCTTTTCTGAGCTATTTGGTCAAAAGCTCCTTATCAAAGGTATTTGAAATTGATGGTAGGAATTATTTGGCATTTGTCTTCATATTTCTACCGTGTTGTGTATGCTTTGTTTCTTTTCAATTATTGCAATTGCAAACCACACTGAGGAAGATTTTTGTTGCCACCAACAATGCACGTTGGTCATGGGAGATCTTTTGTTGTAGAATTTTGGCATGTATAGATAATCTTGGTTTCTTTTGGCAGCAAGTTTTTGTCAGCCCTTCGAATTTGCGAGTGGTATTTCTTGGGGCTTGCTTCAACAAATTTTGCTGCATCTGGAAAGATTTATTTTGTATCGGTGTTTTTCTATGCTTCATACCATTAAAACGATGTTGGACTCGTTGCAGATCACTCTCTTGATTAATTTTAGTTATCAGTCTTCAAATTGTAATATTAGCAATATCATGCAGTCCTATGCATTGTTCATTTCGTAAGGCACATTAAAAACACTATTGTAGTATCAGTTTCTGTTGTGGTGTCGTCGTTCAACAGGATAAGGATTTCGTTATGCGCTATTGACATAAATGTGCTTGATTTTTGAAATTGAGACATACCATTTAAGATCAGTGCCTTAATACAGGACTCACCCAAACTTCAACATTATTTCCGTGTTCGGATGGTATTAGTGTGTCTAGGTGATTAGTTTTGGTTGCAGTTTCTGGTATTGATTTTAACAGACATCTACGAATTTACACTGCACCTGTCACTTTAAAACATTCACGTTTCTAAAACATGACCATTTGTTAGTGGTATCATTGTATTATGTCATTTTGAGTTTACATAC

Ace file of the UniGene sp_v1.1_unigene3893 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	T-complex protein 1 subunit alpha n=4 Tax=Poaceae RepID=Q7FAT6_ORYSJ	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Chaperonin TCP-1, conserved site	IPR002194	-	94%
Blast2go	Chaperonin Cpn60/TCP-1	IPR002423	-	94%
Blast2go	T-complex protein 1, alpha subunit	IPR012715	-	94%
Blast2go	Chaperone, tailless complex polypeptide 1	IPR017998	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A910

Fln msg: your sequence is longer than subject: 547 - 137

Fln protein: MAVSAQNLDLMGERQYGQDVRTQNVMACQAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYIDDKLAVKVEKLGKDSLINCAKTSMSSKIIGSENDFFAKMVVDAVQAVKTTNNKGEIKYPIKGVNILKAHGQSSKDSYLLNGYALNTGRAAQGMPTRVAPAKIACLDFNLQRTKLQMGVQVLVSDPRELDKIRERESDITKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDLRHVAKATGATQVLTFADMEGGETFDPSFLGYADEVVEERIADDDAILIKGAKSSRAVSIILRGANDYMLDEMERSMHDALSIVKRTLESNMVVAGGGAVEAALSVYLENLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHSAQTKADRKHLSNMGLDLAKGTVRNNLEAGVLEPAMSKVKIIQFATEAAITIMRIDDMIKLYKEDNQNEED*

Protein Length: 548

Fln nts: ATGGGGAGGGGTGAATTGGAAATCTACAAAAGCACTCGTTTTGTCACTACACAAAACAGCTTTTGGTAGTAACCCAGAGGCCTTAGGTCAAGCGGACTTTTGTCATTTCTAGATACTTCTTTCCCTCCATTACTGTGTTCTTATTTTCGCTCTTTGCTTTCCGTCGGTGGTGCTTCAGCAAAACTACATTGCAGAGAGCACCTCTGTGTCATAACATCACGCCGAAGCTGTTAAACACCTTTTGTATTTCGCATTTTCTGCCCCTGAAGCACTTAATCGGGGTCAGTA_-_ATGGCGGTCTCAGCACAGAATCTGGACCTCATGGGAGAACGCCAGTACGGCCAAGACGTTCGCACTCAAAATGTGATGGCGTGCCAAGCAGTTGCGAACATCGTCAAGACTTCTCTCGGACCCGTCGGTCTGGACAAGATGTTGGTTGATGACATTGGAGATGTTACAATCACCAATGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCTGCTGCCAAGGTTTTAGTGGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTTGTTATTATTGCTGCTGAGCTACTCAAGCGGGCCAATGACCTTGTTCGGAATAAGATTCACCCTACTTCTATCATCAGTGGTTACAGGCTTGCGATGAGGGAAGCTTGCAAATACATTGACGATAAACTGGCTGTTAAGGTTGAGAAGCTTGGCAAGGATTCTCTTATTAATTGTGCAAAGACAAGCATGTCATCAAAAATCATTGGTTCCGAGAATGATTTTTTTGCAAAAATGGTTGTGGATGCCGTTCAAGCTGTCAAAACTACTAACAACAAGGGTGAAATAAAATATCCAATCAAGGGCGTCAATATTTTGAAGGCACACGGGCAAAGTTCAAAAGATAGTTATCTATTGAATGGGTATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCGGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAGATGGGAGTGCAGGTTCTTGTGAGTGATCCAAGGGAGCTTGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAAGCTGGTGCAAATGTCATATTGACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTTCGCCGTGTACGCAAGGAAGACTTGCGTCATGTAGCCAAGGCAACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATCCATCATTCCTTGGTTATGCGGATGAGGTTGTAGAGGAACGCATTGCTGATGATGATGCCATTTTGATCAAAGGAGCTAAGAGTTCAAGAGCAGTTTCCATAATATTAAGAGGTGCTAATGATTACATGTTGGATGAGATGGAACGGTCTATGCACGATGCCCTGTCCATTGTGAAAAGGACATTGGAGTCTAACATGGTAGTTGCTGGTGGTGGGGCTGTTGAAGCAGCTTTATCAGTCTACTTGGAGAACTTGGCAACCACTTTAGGTTCTAGGGAACAACTTGCTATTGCGGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTTGCTGTGAATGCTGCAAAAGATGCTACAGAGCTAGTTGCTAAACTGCGTGCTTACCATCACAGTGCTCAGACAAAGGCTGACAGAAAACATCTCTCGAACATGGGACTTGATCTTGCAAAAGGAACTGTCAGGAACAATCTCGAAGCAGGTGTCCTCGAACCAGCCATGAGTAAAGTGAAAATTATACAGTTTGCGACCGAGGCTGCTATAACAATTATGCGAATTGATGACATGATAAAGCTTTACAAGGAGGACAATCAAAATGAAGAGGACTAG___AGATGTGAGGAATGGAAGTAGTTCCATATCCAGAATTAAGTAGCTACAACACGGTGAGGAATTCAATTTAGTAAATTGAGGCTGGATTATGTGAGATATCAAAGCTGAGTTTATTTCGCAAATTGCCCTCCTAATATTTATAGCATTTCAAGCATATGTAATGCTTTGAAGTTATGATTTGCAACCAACACCACATGAGTTCTTGTGGGTTTTTCTTTTGAATATATACTGTTTAGTGCAGCACTGCCTGCATTGATAGTTTTGTTTCTTTTCTGAGCTATTTGGTCAAAAGCTCCTTATCAAAGGTATTTGAAATTGATGGTAGGAATTATTTGGCATTTGTCTTCATATTTCTACCGTGTTGTGTATGCTTTGTTTCTTTTCAATTATTGCAATTGCAAACCACACTGAGGAAGATTTTTGTTGCCACCAACAATGCACGTTGGTCATGGGAGATCTTTTGTTGTAGAATTTTGGCATGTATAGATAATCTTGGTTTCTTTTGGCAGCAAGTTTTTGTCAGCCCTTCGAATTTGCGAGTGGTATTTCTTGGGGCTTGCTTCAACAAATTTTGCTGCATCTGGAAAGATTTATTTTGTATCGGTGTTTTTCTATGCTTCATACCATTAAAACGATGTTGGACTCGTTGCAGATCACTCTCTTGATTAATTTTAGTTATCAGTCTTCAAATTGTAATATTAGCAATATCATGCAGTCCTATGCATTGTTCATTTCGTAAGGCACATTAAAAACACTATTGTAGTATCAGTTTCTGTTGTGGTGTCGTCGTTCAACAGGATAAGGATTTCGTTATGCGCTATTGACATAAATGTGCTTGATTTTTGAAATTGAGACATACCATTTAAGATCAGTGCCTTAATACAGGACTCACCCAAACTTCAACATTATTTCCGTGTTCGGATGGTATTAGTGTGTCTAGGTGATTAGTTTTGGTTGCAGTTTCTGGTATTGATTTTAACAGACATCTACGAATTTACACTGCACCTGTCACTTTAAAACATTCACGTTTCTAAAACATGACCATTTGTTAGTGGTATCATTGTATTATGTCATTTTGAGTTTACATAC

Fln Alignment:

sp_v1.1_unigene3893___LSVYLENLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHSAQTKADRKHLSNMGLDLAKGTVRNNLEAGVLEPAMSKVKIIQFATEAAITIMRIDDMIKLYKEDNQNEED
D5A910______________LSVYLENLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHSAQTKADKKHLSNMGLDLAKGSVRNNLEAGVLEPAMSKVKIIQFATEAAITIMRIDDMIKLYKEDNQNEGD

SNPs (tot: 114)

Position	A %	C %	G %	T %	Probability
200	33		66		0.997452
288		33		66	0.997452
289		33		66	0.997452
495	88		11		0.923564
497			11	88	0.923564
498	88			11	0.923564
499	88		11		0.923564
503	10			90	0.90298
504			10	90	0.90298
505		10		90	0.90298
585		90		10	0.90298
586	90			10	0.90298
587	90		10		0.90298
588	90			10	0.90298
591	90	10			0.90298
592	90			10	0.90298
595		90		10	0.90298
596	90		10		0.90298
601			10	90	0.90298
607			10	90	0.90298
608	90	10			0.90298
611			10	90	0.90298
613		90		10	0.90298
616	90	10			0.90298
617	90		10		0.90298
619		10		90	0.90298
620			10	90	0.90298
635		77	22		0.999999
637		77	22		0.999999
638	22	77			0.999999
648		77	22		0.999999
655		22		77	0.999999
657	22			77	0.999999
658		22		77	0.999999
731		87		12	0.992554
738	87	12			0.992554
747	83			16	0.999991
750	83	16			0.999991
787			11	88	0.923564
791		11		88	0.923564
793	88	11			0.923564
794		11	88		0.923564
795	11		88		0.923564
798		88	11		0.923564
800		11		88	0.923564
801	11			88	0.923564
802		11		88	0.923564
806		88	11		0.923564
839			85	14	0.993533
840		85	14		0.993533
847		14		85	0.993533
848		14	85		0.993533
849	14	85			0.993533
850	14			85	0.993533
852		85	14		0.993533
853	85			14	0.993533
855	14			85	0.993533
856	85	14			0.993533
857	85		14		0.993533
861			85	14	0.993533
862			16	83	0.994512
864			16	83	0.994512
865	83			16	0.994512
866			16	83	0.994512
868		16		83	0.994512
869	16			83	0.994512
870		83	16		0.994512
871	80	20			0.995493
872	80	20			0.995493
876	75		25		0.996473
1995		6		93	0.999153
2021	92		7		0.999532
2023			7	92	0.999602
2024	7			92	0.999602
2025		7		92	0.999602
2026	7			81	1.0
2033	7		92		0.999602
2035		92	7		0.999602
2038			7	92	0.999602
2114			10	90	0.90298
2116		90		10	0.90298
2120	10			90	0.90298
2210	88	11			0.923564
2211		14		85	0.993533
2212		14		85	0.993533
2213	14			85	0.993533
2222	80			20	0.995493
2223	80		20		0.995493
2350		66		33	0.997452
2745	76			23	1.0
2799	4		95		0.997218
2832	5		94		0.997984
2854		8	86		0.999998
2856		86		13	1.0
2872	92	7			0.999532
2873	92	7			0.999532
2877	92		7		0.999602
2885	81			14	1.0
2887		3		80	1.0
2888	88	11			1.0
2889	84		15		1.0
2890	3	7		88	0.999079
2891		4	76		1.0
2894		24	76		1.0
2895	20		80		1.0
2897	75	20	4		1.0
2898	83	16			1.0
2899	91	8			0.999766
2902	77	4	18		1.0
2905	80	19			1.0
2906	19			80	1.0
2908			19	80	1.0
2929	14			85	0.999981
2950	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain