SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3881

Length: 1342 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3881 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	dihydroflavonol 4-reductase	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	66%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K5

Fln msg:

Fln protein: MQRQVRDEADKIMEGVEARKCKVCVTGAGGYIASWLVKNLLMTGYSVNATFRDPGNDSKTRHILCLPGAKERLRLFKADLRQEGSFHAAVEGCEYVFHLATPMDFAIEAQTQTSVIEAEVNGTLDILRTCSQAKSVRRVIYTSSITAASPLNDDGEFRDCLDESCWTPIDIMRREKPIFWMYYVAKTLAEQAALQYGSEDHGIEVVTIAPAIVAGPFLTPTLPASIEQALPFITGNAEHFEWLRELHDIMGSILLIHTEDACNAHIFLMEHPSAKGRYVCSSPPLTLREMEDFCAKRYPQFSLPLKFHIKDNVLNGVPFPSRKLLDIGFTYQYGLAEILDDSVEFARKIGVLP*

Protein Length: 355

Fln nts: ATGGGCAGACCATAAGATGAGGGGCTGGATCGAATCAGCCAACTACTCTTCCAAATGGACAACAACAGACCATAAGATGAGGGACGAAGATAAGATGATAACTAGTTGCCCAGGGACGAATATAAGGTGATAAAAGGGAGACGGCAGAAAGTGAAA_-_ATGCAGAGACAGGTGAGGGACGAAGCTGATAAGATAATGGAGGGAGTGGAAGCAAGAAAATGCAAGGTCTGCGTGACGGGGGCTGGAGGGTACATCGCGTCATGGCTCGTCAAAAATCTTTTGATGACGGGATATAGCGTCAACGCCACTTTTAGAGATCCAGGCAACGATAGCAAAACTCGCCATATTCTTTGCCTGCCGGGAGCTAAAGAGAGGCTGAGACTCTTCAAAGCCGACCTCCGCCAAGAGGGAAGCTTCCATGCTGCCGTTGAGGGTTGTGAGTACGTTTTTCACTTGGCAACTCCAATGGATTTCGCCATTGAAGCACAGACACAGACTAGCGTTATCGAAGCTGAGGTGAATGGTACTCTTGATATTCTGAGGACTTGCAGTCAGGCAAAGTCTGTGAGGCGTGTAATTTACACATCATCCATAACTGCAGCCTCGCCACTTAATGATGATGGCGAATTCAGGGACTGCCTCGATGAATCTTGCTGGACCCCAATCGATATCATGAGACGCGAAAAGCCTATTTTCTGGATGTATTATGTAGCCAAAACATTAGCAGAGCAAGCAGCTCTTCAATATGGGTCAGAGGATCATGGTATTGAAGTAGTGACGATAGCTCCAGCTATTGTTGCAGGACCTTTTCTTACACCCACACTTCCGGCCAGCATTGAACAAGCGTTGCCATTCATCACAGGCAACGCTGAACATTTTGAATGGTTAAGGGAGCTTCATGATATCATGGGCTCCATTTTATTAATCCACACTGAGGATGCTTGTAATGCTCACATATTCTTGATGGAGCATCCCTCTGCGAAAGGTCGATATGTATGTTCTTCTCCACCTCTCACTCTGCGAGAAATGGAGGATTTCTGTGCTAAACGTTATCCACAATTCTCCCTCCCACTCAAATTTCATATCAAAGACAATGTTCTTAATGGTGTGCCCTTTCCCTCAAGAAAATTGCTGGACATCGGGTTCACTTACCAGTATGGATTAGCAGAAATTTTAGATGATAGCGTTGAATTTGCAAGGAAGATAGGCGTACTACCCTGA___ACATGTAAGCGCCAAGGAAGTTTGGTTGGTTGACAATGAGATAAATAAAATGGTGGGATATTATGTGGTTTGTATTAAAAACATGTTTCTTAAATTAATAGACTATAAAGGGATTATTTTGGTC

Fln Alignment:

sp_v1.1_unigene3881___EARKCKVCVTGAGGYIASWLVKNLLMTGYSVNATFRDPGNDSKTRHILCLPGAKERLRLFKADLRQEGSFHAAVEGCEYVFHLATPMDFAIEAQTQTSVIEAEVNGTLDILRTCSQAKSVRRVIYTSSITAASPLNDDGEFRDCLDESCWTPIDIMRREKPIFWMYYVAKTLAEQAALQYGSEDHGIEVVTIAPAIVAGPFLTPTLPASIEQALPFITGNAEHFEWLRELHDIMGSILLIHTEDACNAHIFLMEHPSAKGRYVCSSPPLTLREMEDFCAKRYPQFSLPLKFHIKDNVLNGVPFPSRKLLDIGFTYQYGLAEILDDSVEFARKIGVL
A9P2K5______________EGKGLPVCVTGAGGYIGSWLVKTLLENGYTVHATLRDPGNPSKNSCLLSLPGAQERLRLFRADLCEEGSFDSAIHGCHGVFHVATPIDFGSQ-DPENEIIEPAIRGTLNVLRSCKRIESVRRVVCTSSLSAASTADESAH----VDESCWTSLDSIRENKRHGWFYAESKTLAERAALEFGKQE-GINVVSIVPPIIAGPFITTTIPASVDATLSLITGNPLWYGLLQSIQFIPNTVSLIHVQDICNAHVFLMEHPAAEGRYLCSGHTTTMPDFAHVISGRYPQYKITSKFDESQSAAAG-SISSQKLLDLGFKYKYSLEEIIDDSVQYFQKLTTL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
251	33		66		0.997452
314		66		33	0.997452
499	50		50		1.0
551	33			66	0.997452
632			25	75	0.996473
737			83	16	0.994512
808			85	14	0.993533
845	83		16		0.994512
846		16		83	0.994512
848	16	83			0.994512
893	75		25		0.996473
896	75		25		0.996473
902	25		75		0.996473
914		75		25	0.996473
920			50	50	1.0
974		50		50	1.0
980	25			75	0.996473
995	27	54	18		1.0
997	36		63		1.0
1058		81		18	0.999994
1064		72		27	1.0
1079			77	22	0.999999
1121		57	42		1.0
1136		16		83	0.994512
1155		66		33	1.0
1159		40		60	1.0
1167		40		60	1.0
1182		80		20	0.995493
1192	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain