SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3879

Length: 894 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3879 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat family protein / protein kinase family protein	-	-	9.94922e-44	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	receptor-like serine threonine kinase	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	58%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	58%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	58%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	58%
Blast2go	Protein kinase-like domain	IPR011009	-	58%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 29 aas, your sequence is shorter than subject: 255 - 402

Fln protein: LVYEYLENNSLEKALFGNNKHQLQLDWPIRYNICIGTARGLAYLHEESSTRIIHRDIKASNILLDNSLNPKIGDFGLAKLYNEKKNSCHHQSCGYSWISVTRICNAGSSYRKGRRVQLWGSCIGACEW*EKHRDKLATKDGYLLEWTWHLYEQGRPLDLMDPEIESTRSNEEVLRVIEVALLCTQAVPTMRPPMSRVVAMLTGDVEEIPVASRPGYIQDFQHNSSIARASGTGSTPTVATPLMGDMTEITNFRA*

Protein Length: 256

Fln nts: CTTGGTCTATGAGTACTTGGAAAACAACAGTCTTGAAAAAGCTTTATTTGGTAATAATAAACATCAGCTACAGCTGGATTGGCCTATTCGATACAATATTTGTATTGGCACTGCACGTGGACTTGCTTACCTTCACGAGGAGTCCAGTACTCGGATAATTCATCGAGACATCAAAGCCAGCAACATTCTGTTGGATAATTCTCTCAACCCTAAGATAGGAGATTTTGGCTTAGCTAAGCTATACAATGAGAAGAAAAACTCATGTCACCACCAGAGTTGCGGGTACAGTTGGATATCTGTCACCAGAATATGCAATGCGGGGTCATCTTACAGAAAAGGCAGACGTGTTCAGCTTTGGGGTAGTTGCATTGGAGCTTGTGAGTGGTAGGAGAAACACAGAGACAAGCTTGCCACAAAAGATGGTTATCTTCTTGAATGGACATGGCATCTTTATGAGCAAGGAAGGCCTCTCGATTTGATGGATCCTGAGATAGAATCAACACGCTCAAACGAAGAAGTCCTCAGAGTGATTGAAGTGGCCCTTCTTTGCACTCAAGCGGTGCCTACAATGCGTCCACCGATGTCTAGAGTGGTCGCAATGCTGACTGGTGATGTAGAGGAAATTCCTGTTGCTTCTCGCCCGGGTTACATTCAGGATTTTCAACATAACAGTTCCATTGCAAGAGCTAGCGGCACTGGCAGTACACCTACCGTAGCAACACCACTAATGGGTGATATGACAGAGATCACCAATTTTAGGGCATGA___AAGCATTAAATTGTCTTCAGCAAAAAGAAATTGTAAGTCCATGAAAGATTGAAAGTGCTATAACAGAGGGCCTGATGAGAGCTGGCTTGGGCATCAAGATTAATAAAACGGCAGACTAGTCTTCGCTG

Fln Alignment:

sp_v1.1_unigene3879___LVYEYLENNSLEKALFGNNKHQLQLDWPIRYNICIGTARGLAYLHEESSTRIIHRDIKASNILLDNSLNPKIGDFGLAKLYNEKKNSCHHQSCGYSWISVTRICNAGSSYRKGRRVQLWGSCIGACEW*EKHRDKLATKDGYLLEWTWHLYEQGRPLDLMDPEIESTRSNEEVLRVIEVALLCTQAVPTMRPPMSRVVAMLTGDVE-EIPVASRPGYIQDFQHNSSIARASGTGSTP
A9NWR4______________LVYEYLEKNSIAQALLDNTR--MDMDWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNVLLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTFPLEEQFLLEWTWQLREESRLLDIVDPRLEE-YPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFK---NLKVSAGTSRPP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
128			20	80	0.995493
133	20		80		0.995493
159	80		20		0.995493
162	80		20		0.995493
169	80		20		0.995493
178		20	80		0.995493
196		62	37		1.0
372		33	66		0.997452
384	33		66		0.997452
506			33	66	0.997452
528		33		66	0.997452
582			33	66	0.997452
636	50		50		1.0
664		33		66	0.997452
785	75		25		0.996473
799		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain