SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3869

Length: 1462 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3869 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	82%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	82%
Blast2go	somatic embryogenesis receptor kinase	-	-	90%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	90%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	90%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	90%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	90%
Blast2go	Protein kinase-like domain	IPR011009	-	90%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: your sequence is shorter than subject: 311 - 630

Fln protein: VVTLAVTHGSLVAVKRLKDERSSAGELQFQTEVEMISMAVHRNLLRLRGFCMSPTERLLVYPYMSNGSVASCLRERQTDQEPLDWPKRRCIALGSARGLSYLHDHCDPKIIHRDVKAANVLLDDVFEAVVGDFGLAKLMDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQNNYEETEVEQLIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWQKVEVMRNTDQEHVHRHPDWISESASNVHPVELSGPR*

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTCATTGGTGGCTGTGAAACGCTTGAAGGATGAGCGTAGTTCAGCTGGAGAGTTGCAGTTTCAAACAGAAGTGGAGATGATCAGTATGGCAGTACACAGGAACCTCCTTCGGCTTCGTGGGTTCTGCATGTCACCAACTGAACGTCTACTTGTTTATCCTTACATGTCTAACGGGAGTGTTGCATCTTGTCTACGAGAACGACAGACAGATCAAGAACCACTAGATTGGCCTAAACGCAGGTGCATAGCACTGGGTTCAGCAAGAGGCCTTTCCTATCTACATGATCATTGTGATCCTAAGATTATTCACCGGGATGTGAAGGCTGCTAACGTCCTATTGGATGATGTGTTTGAAGCTGTGGTGGGAGATTTTGGTTTAGCCAAACTTATGGATTACAAGGATACTCATGTGACTACAAATGTCTGTGGTACAATTGGACACATAGCACCGGAATACCTTTCTACTGGAAAGTCTTCAGAAAAGACTGATGTATTTGCATATGGGATTATGTTGCTGGAAATTATCACAGGACAGAGGGCATTTGACCTTGCACGATTAGCAAGTGACGATGATATCATGCTTCTTGACTGGGTTAAAGGGATGCTAAGAGAGAGGAGGCTGGATAGGCTGGTTGATCCAGAACTCCAGAACAATTATGAGGAAACAGAGGTGGAGCAACTTATTCAAGTTGCCTTACTTTGCACCCAAAATTCACCAATGGAAAGACCAAAGATGGCCGATGTGGTACGGATGCTAGAAGGTGATGGCTTAGCTGAAAGATGGGATGAATGGCAAAAGGTGGAGGTAATGCGTAACACTGATCAGGAGCATGTACATCGACATCCAGACTGGATTTCTGAGTCAGCATCTAATGTTCATCCAGTTGAATTGTCTGGTCCAAGATAA___GAAGTCAAAAGTATATTCAGTGTGGCCAATAATTTATTTTTCTTCGACTTGTAGTGATTATTACATAGTAAGTCCCACTGGTGGTCACAATATTATCTTCAAGCATTTCATTTTATTGGATGTCCCACCGCAGTGATGCTTGGTGTATCCTTGGTTTGCCTCAAAAATATATGTATGGGAACCATGGGTTTTGGATCACTGAGGATCAAAATTGACCTTGTAATGTGTTTAAGGATGAATCTAGTATACTTTTTATTGTAAAAGTTCCAGTTCGTCTGTAAAGAAGCCGTTCTCTTTGGACACGAAGCTCCACAGATCACTGCCATTGAAAACACTCTCTTTGTAATGTGGATTCTAATCTCCAAATGCTTGCCACTTATTGTATCCAGAATTATTTGAAAGGCTACAGCAAGTTAGGATTCTATTAATCTCGAGTTGATTTTCAAGCACACAAACTGGAATCCTTACTAGTTTGCATGTCCCAGATATCTGAAGTAAAGGAAGAAGTGCTCAACTGCAAGTTATCTC

Fln Alignment:

sp_v1.1_unigene3869___GSLVAVKRLKDERSSAGELQFQTEVEMISMAVHRNLLRLRGFCMSPTERLLVYPYMSNGSVASCLRERQTDQEPLDWPKRRCIALGSARGLSYLHDHCDPKIIHRDVKAANVLLDDVFEAVVGDFGLAKLMDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQNNYEETEVEQLIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWQKVEVMRNTDQEHV-HRHPDWISESASNVHPVELSGPR
D1MEH6______________GSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
698	20		80		0.999996
731	20		80		1.0
737	73	20		6	1.0
741		20		80	1.0
746			6	20	1.0
749	80	20			1.0
750		80	20		1.0
751	20			80	1.0
752		20		80	1.0
757	83		16		0.999991
764	16			83	0.999991
766	16	83			0.999991
767	83		16		0.999991
770	16			83	0.999991
771	16	83			0.999991
772			18	81	0.999994
1179	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain