SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3855

Length: 940 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3855

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RSE9_RICCO	-	-	55%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	59%
Blast2go	dna-binding protein chloroplast	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	JmjC domain	IPR003347	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9U241

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 313 - 689

Fln protein: GYSERNLRQAAHRKDNSDNYLYCPTVRDTGEEGLEHFQKHWLRGQPVIVQNVLEGTSSLSWDPLVMLWPVRETMNGKFNEETKIKAIDCLNWCETEISVNHFFKGYADGQMHKTGWPLMLKLKDWPPRNFFEEHLPRHRAEFINALPFHEYTHPEWGLLNLAAKLPDNCLKPDIGPRTYIAYGTSEELGRGDSVTKLHCDMYDVVNVLTHTAEVKFPGWQQLKIDKIQRSLRALDSEELYEDSDRIGNSFGEEERGKTTKIEASSFDVSVSQSNRKVSSSQTTDECLNDNDIESSLRAKSLDYMEEKNWDING

Protein Length: 314

Fln nts: GGATATTCTGAAAGGAATTTACGCCAAGCAGCTCATAGGAAGGACAACAGTGACAATTATTTGTACTGTCCAACTGTACGGGATACTGGGGAAGAAGGCCTTGAGCATTTCCAGAAACACTGGCTTAGAGGTCAACCGGTCATTGTGCAGAATGTTCTTGAAGGCACTTCCAGTCTGAGCTGGGACCCATTGGTCATGTTGTGGCCTGTTCGTGAGACTATGAATGGCAAGTTTAATGAGGAGACAAAGATAAAGGCCATTGATTGCTTAAATTGGTGTGAAACTGAAATCAGCGTCAACCATTTTTTCAAAGGGTATGCAGATGGTCAAATGCATAAAACTGGTTGGCCTTTGATGTTGAAGCTGAAGGATTGGCCACCGCGAAATTTCTTTGAAGAACATTTACCACGCCATAGAGCTGAATTCATTAATGCATTGCCCTTCCATGAGTACACACATCCTGAATGGGGCCTTCTTAATCTGGCAGCAAAGCTTCCTGATAATTGCTTAAAGCCTGATATAGGACCCAGAACTTACATTGCTTATGGGACAAGTGAAGAACTTGGCCGAGGTGATTCTGTTACTAAGCTGCACTGTGATATGTATGATGTGGTAAATGTATTGACTCATACAGCTGAAGTCAAGTTCCCAGGATGGCAGCAACTTAAGATAGATAAAATTCAAAGATCATTAAGAGCATTAGACTCAGAAGAACTTTATGAAGACTCAGATAGGATTGGAAATTCCTTTGGTGAAGAAGAGAGAGGAAAAACAACTAAAATTGAGGCATCATCATTTGATGTTTCTGTGTCTCAAAGCAATAGAAAAGTTTCTTCAAGTCAAACTACTGATGAATGTCTTAATGATAATGACATTGAATCTAGTTTGAGGGCAAAGTCTCTTGATTATATGGAAGAGAAAAATTGGGATATAAATGGAG

Fln Alignment:

sp_v1.1_unigene3855___ERNLRQAAHRKDNSDNYLYCPTVRDTGEEGLEHFQKHWLRGQPVIVQNVLEGTSSLSWDPLVMLWPVRETMNGKFNEETK-IKAIDCLNWCETEISVNHFFKGYADGQMHKT--GWPLMLKLKDWPPRNFFEEHLPRHRAEFINALPFHEYTHPEWGLLNLAAKLPDNCLKPDIGPRTYIAYGTSEELGRGDSVTKLHCDMYDVVNVLTHTAEVKFPGWQQLKIDKIQRSLR
A9U241______________KQDLRLCANRIHSNDNYLFCPTRQSVEDVGLTHFQKHWMRGEPVIVRDVLECTTGLSWEPLVMWRAVRETTKGKFKDDTKTVKALDCLDWREVEINIHQFFKGYEEGRLQRKPDGWPEMLKLKDWPPSNHFEERLPRHGAEFLHALPFHEYTDPSKGMLNLAAQLPKEAIKPDLGPKTYIAYGLRHELGMGDSVTKLHCDMSDAVNVLTHSAEIKFPKDKVPMIEKLLKKFK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
675	66	33			0.997452
920	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain