SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3853

Length: 1210 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3853

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin MtN3 family protein	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RAG1-activating protein-1-related	IPR004316	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZG1

Fln msg:

Fln protein: MRSYLLLIVGILGNAASLLLYGAPMVTFRRVIRNRSTENFSGFPYAIALLNSLLYSWYGSPLISHGLDNILVLTINGVGIVLEFIFVCIFLKYAIPTAKKRMVTTMVGVTLVFACISTVSLVALGVQKDKKKLVGISGMVVTVVMYGSPLSDAWSVIETRSVEYMPIHFSVFALINSCLWMIYFLLDNDLILACPNIIGVPLGIGQIVVYCMYREQPSNEAKKVGPFDPEIGLKERAVAEETDSTDAEETGERSLEMVQIQKIKHAFDSVGEK*

Protein Length: 275

Fln nts: ATGGGGGCACCATTCACAGAGCAGCATTGCCTCCATTCCTCCTCTGTCTCGTTACCCACTCCATTTGGGTTCTGTTAAACTCTTCACAGGAGAAAA_-_ATGAGGAGCTACCTGCTTTTAATAGTTGGCATTCTAGGAAACGCGGCATCCTTGCTATTGTATGGAGCACCAATGGTCACATTTAGGAGAGTGATAAGAAACAGATCGACAGAGAATTTCTCAGGGTTCCCATATGCGATAGCTCTGCTAAATTCTCTGCTCTACTCGTGGTATGGCTCGCCTCTGATTAGTCATGGTCTGGATAACATCTTGGTGTTGACCATCAATGGGGTCGGAATTGTGCTGGAGTTTATATTTGTTTGCATCTTTCTGAAATACGCCATACCCACAGCCAAGAAAAGAATGGTGACCACAATGGTGGGTGTGACGTTGGTGTTTGCCTGCATCTCAACAGTTTCTCTGGTTGCTCTTGGGGTTCAGAAGGATAAGAAAAAGCTAGTGGGGATTTCGGGGATGGTTGTGACTGTGGTTATGTATGGTTCTCCACTTTCCGATGCTTGGTCGGTGATAGAGACGAGAAGTGTGGAGTATATGCCCATCCATTTCTCCGTGTTTGCACTGATCAACAGTTGTTTATGGATGATTTACTTCCTTCTCGACAACGACCTCATCCTAGCGTGTCCAAACATAATTGGCGTACCATTGGGCATAGGCCAAATAGTGGTGTATTGTATGTACCGGGAGCAGCCAAGTAATGAAGCAAAGAAAGTGGGTCCATTTGATCCAGAGATTGGGTTGAAAGAGAGGGCAGTTGCAGAGGAAACGGATTCAACAGATGCAGAGGAAACAGGTGAACGGAGCCTGGAAATGGTGCAGATCCAGAAGATAAAACATGCCTTCGATTCGGTTGGGGAGAAGTGA___CAAATGTGTGCAATCAGGTCAAGTTGGAGGCAGTGATCGAAAATATAAATTTATGGGAGCGCTCCGGAAGTTTGGACTGTGTATGCAACTTTTGTTATACGTTTTCACGAGGGTTATTACCAATAGATGTGGCTATATCCGAAAGATTATGGTTGTAAGATTTTACTTGAGAATTTTTTATTTACAAATATTAGTATCATATGATGTTCCGCCGTTAGTCATCGAAAGAGCGGATGCGCGACTTGTAAGATTCTATTTCAACATTTTTATTTACCAATATTATTATCGTACC

Fln Alignment:

sp_v1.1_unigene3853___RSYLLLIVGILGNAASLLLYGAPMVTFRRVIRNRSTENFSGFPYAIALLNSLLYSWYGSPLISHGLDNILVLTINGVGIVLEFIFVCIFLKYAIPTAKKRMVTTMVGVTLV-FACISTVSLVALGVQKDKKKLVGISGMVVTVVMYGSPLSDAWSVIETRSVEYMPIHFSVFALINSCLWMIYFLLDNDLILACPNIIGVPLGIGQIVVYCMYREQPSNEAKKVGPFDPEIGLK
A9NZG1______________KDHIRLAVGIIGNITSLLLYGAPVLTFMKVIKEKSVGQYSCTPYLIALFNCLIYTWYGFPVVSNGWENFLVSTVNGVGIVPECFAICTYIVYA-PPKFKRKVARMVGCVLVLFGVMAAISFFSLHDHKNRKFMIGIVGILSSISLYSAPFVAMKLVIQTKSVEFMPFYLSFFAFINCIMWMTYGALSRDIFLATPNVIGSPLALAQLVLYCIYRKK-TRGVQNGNNLDPEEGVQ

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
280		80	20		0.995493
287			20	80	0.995493
289		20	80		0.995493
292	80			20	0.995493
300			80	20	0.995493
303	80	20			0.995493
420		14	85		0.993533
428		14	85		0.993533
433		14		85	0.993533
436			14	85	0.993533
438		14	85		0.993533
439	14	85			0.993533
442		14	85		0.993533
443	14	85			0.993533
764			83	16	0.994512
765	83			16	0.994512
766	83	16			0.994512
771	16		83		0.994512
774		88	11		0.923564
777			10	90	0.90298
778			10	90	0.90298
779		10		90	0.90298
780		10	90		0.90298
839	88		11		0.923564
840			88	11	0.923564
841	88	11			0.923564
843			88	11	0.923564
844	88		11		0.923564
846	88	11			0.923564
848	88			11	0.923564
856			86	13	0.999973
881		10	90		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain