SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3842

Length: 2224 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3842
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCCCCGTTGGTCATCATACGCGCACAGGTTTTTGCCATTGCACTACAGAGGATTGGCCTACTTATACAGCGTCGTGACCTTGGCTGTCATCTCAGAGTATCGTCGGCCATTTCCTTCAAGAATTATCACAGATGCCGAACGCCTGTGTGAGCTCTCCCGTGTTTTCCTGTGTATCCTACCGCTCAATCTCGTTTTCTGAGGCCACCAGTTCGAATCGCAGGGGAAGAGGCTGCAACAATTTGGCCTTCTTCGGGTGGAAATGCCGACAAGGGATTTCTGCGAGAGCAGTGGGTGCGATAGAGAAAGAATCGGCCATGGCGGAGAAGCCCGGGACGTTTCTGAGAGACAGCGAAGGAGAACAGTTGGGCACAAGTTCAGTGAGAGCGCGTTTCGAGAAAATGATAAGGAAAGCGCAGGATGACGTGTGCGCGGCTGTGGAAGCGGTGGACGGCCACAGTTTCAGGGAGGACGTCTGGTCGAGGCCAGGGGGAGGGGGCGGAATCAGCAGAGTCTTGCAGGACGGAAATGTGTGGGAAAAGGCAGGCGTTAATGTTTCAGTTGTCTATGGGAGTATGCCGCCCGAGGCTTACCGTGCGGCCAAGCCCGTTAATTCCTCAGACAATGGCAACAGATTGAGCGCAATTCCGTTCTTCGCTGCCGGAATTAGCTCGGTCATGCATCCTAAAAATCCTTTTGCTCCTACTGTGCATTTCAATTATCGTTACTTCGAGACTGATGCTCCAAAAGATGTGGAGGGAGCTCCTAGGCAATGGTGGTTTGGTGGAGGTACTGATTTGACTCCATCATATGTGTTTGAAGAGGATGTCAAGCATTTCCACATGGTTCAGAAGGAAGCATGTGATAAGTTTGATCCATCTTTCTATCCAAGGTTCAAGAAGTGGTGTGATGACTACTTCTTTATTAAGCATCGTGGTGAAAGGCGTGGAGTTGGAGGAATATTCTTTGATGACCTTAATGAGAATGACCAAGAGATGTTACTCGCATTTTCAACAGAGTGTACAAACTCGGTAATCCCGGCATACATACCAATAATAGAAAAGCGCAAGGATATGCCATTCACAGAAGATCACAAGTCCTGGCAACAGTTGAGAAGAGGTCGTTATGTTGAGTTCAACCTCGTTTATGACCGGGGTACTACATTTGGACTCAAGACAGGAGGACGAATAGAGAGTATTTTGATGTCATTGCCTTTGACTGCGCGGTGGGAGTATGATCATCGACCAGTAGAAGGTAGCGAGGAATGGAAATTACTGGATGCCTGCATCAATCCAAAGGAGTGGCTGCAAGCTTGAACTTTATTTCATTCTTTGAGGCAAAGAATAGTTTTTTTTTTTTTTTTTAATATTCAAATTCCCAACACAGGTAGGCGAGGGTTAGTTTTGTAGCTGGATTCAAAGGTATTATTGGGAGATCATTCTTCCTTTTGGCTCTTTGAAAGTTATCCAGTGAATCAACTGATAGTGTAACCCAAAAAGTAAATATTCACTACAAGTGACCATGTTGAGTTCCTTGGGCCACATTTATTCCTGTTATTCAGATTTATATATTCCAAATGAAAGATGTAGGGAGCTAATCAGTGTTTCTCGTTTTAGTGTGGGTTTTGGGATTTATTGTACATGGACATCTTTGAGCCTGTTCATTCTAAGTCTTCTTTGACAAAAGGAATGGTTGATATCTATGTTGCATAGGGTTGCGTTCCTGCCTCAAAACCCCACATACCTGCTGATCCGACGTTTCAGGGACTTTAGGGGACCATGCCCTCCTCTTTCTGGGCAAAGTTTAGGGCACTTTTAATGGACCGACTCCACGGGCCTTTAATTTTTCAGGGACTCCGAGACATCCCTGTCATTCTGTCTTTCCGGTTAGGCTACAAATTGGCAAAATAAAATTTAAAAATGCCACTTGTAACATGACCCTGTTTGTATATGAAACTATTCCGAGCAGATAGCGAAGGTAGACAATCAGTGTTAAAAATTACACCGTCCCCAAGTTGAATCCTCTGGCATGTTTCTTTAAGCTACTATGTGTTGATTTCGGTGTGTACTGTTGACGTTGTCGTTTGTTATTGGGTATGCAACGGAATGTGCAAAATATGATGTTCTCTTTCTGGAACTGTTTGAAATTAGATGGATTATTTTCTGTCACCAGAACTTGGACTTATTCTTTCCCGTA

Ace file of the UniGene sp_v1.1_unigene3842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Coproporphyrinogen III oxidase, putative n=1 Tax=Ricinus communis RepID=B9RXC7_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	coproporphyrinogen iii oxidase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Coproporphyrinogen oxidase.	EC:1.3.3.3	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	86%
Blast2go	coproporphyrinogen oxidase activity	GO:0004109	Molecular Function	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL28

Fln msg:

Fln protein: MPNACVSSPVFSCVSYRSISFSEATSSNRRGRGCNNLAFFGWKCRQGISARAVGAIEKESAMAEKPGTFLRDSEGEQLGTSSVRARFEKMIRKAQDDVCAAVEAVDGHSFREDVWSRPGGGGGISRVLQDGNVWEKAGVNVSVVYGSMPPEAYRAAKPVNSSDNGNRLSAIPFFAAGISSVMHPKNPFAPTVHFNYRYFETDAPKDVEGAPRQWWFGGGTDLTPSYVFEEDVKHFHMVQKEACDKFDPSFYPRFKKWCDDYFFIKHRGERRGVGGIFFDDLNENDQEMLLAFSTECTNSVIPAYIPIIEKRKDMPFTEDHKSWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILMSLPLTARWEYDHRPVEGSEEWKLLDACINPKEWLQA*

Protein Length: 395

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCCCCGTTGGTCATCATACGCGCACAGGTTTTTGCCATTGCACTACAGAGGATTGGCCTACTTATACAGCGTCGTGACCTTGGCTGTCATCTCAGAGTATCGTCGGCCATTTCCTTCAAGAATTATCACAG_-_ATGCCGAACGCCTGTGTGAGCTCTCCCGTGTTTTCCTGTGTATCCTACCGCTCAATCTCGTTTTCTGAGGCCACCAGTTCGAATCGCAGGGGAAGAGGCTGCAACAATTTGGCCTTCTTCGGGTGGAAATGCCGACAAGGGATTTCTGCGAGAGCAGTGGGTGCGATAGAGAAAGAATCGGCCATGGCGGAGAAGCCCGGGACGTTTCTGAGAGACAGCGAAGGAGAACAGTTGGGCACAAGTTCAGTGAGAGCGCGTTTCGAGAAAATGATAAGGAAAGCGCAGGATGACGTGTGCGCGGCTGTGGAAGCGGTGGACGGCCACAGTTTCAGGGAGGACGTCTGGTCGAGGCCAGGGGGAGGGGGCGGAATCAGCAGAGTCTTGCAGGACGGAAATGTGTGGGAAAAGGCAGGCGTTAATGTTTCAGTTGTCTATGGGAGTATGCCGCCCGAGGCTTACCGTGCGGCCAAGCCCGTTAATTCCTCAGACAATGGCAACAGATTGAGCGCAATTCCGTTCTTCGCTGCCGGAATTAGCTCGGTCATGCATCCTAAAAATCCTTTTGCTCCTACTGTGCATTTCAATTATCGTTACTTCGAGACTGATGCTCCAAAAGATGTGGAGGGAGCTCCTAGGCAATGGTGGTTTGGTGGAGGTACTGATTTGACTCCATCATATGTGTTTGAAGAGGATGTCAAGCATTTCCACATGGTTCAGAAGGAAGCATGTGATAAGTTTGATCCATCTTTCTATCCAAGGTTCAAGAAGTGGTGTGATGACTACTTCTTTATTAAGCATCGTGGTGAAAGGCGTGGAGTTGGAGGAATATTCTTTGATGACCTTAATGAGAATGACCAAGAGATGTTACTCGCATTTTCAACAGAGTGTACAAACTCGGTAATCCCGGCATACATACCAATAATAGAAAAGCGCAAGGATATGCCATTCACAGAAGATCACAAGTCCTGGCAACAGTTGAGAAGAGGTCGTTATGTTGAGTTCAACCTCGTTTATGACCGGGGTACTACATTTGGACTCAAGACAGGAGGACGAATAGAGAGTATTTTGATGTCATTGCCTTTGACTGCGCGGTGGGAGTATGATCATCGACCAGTAGAAGGTAGCGAGGAATGGAAATTACTGGATGCCTGCATCAATCCAAAGGAGTGGCTGCAAGCTTGA___ACTTTATTTCATTCTTTGAGGCAAAGAATAGTTTTTTTTTTTTTTTTTAATATTCAAATTCCCAACACAGGTAGGCGAGGGTTAGTTTTGTAGCTGGATTCAAAGGTATTATTGGGAGATCATTCTTCCTTTTGGCTCTTTGAAAGTTATCCAGTGAATCAACTGATAGTGTAACCCAAAAAGTAAATATTCACTACAAGTGACCATGTTGAGTTCCTTGGGCCACATTTATTCCTGTTATTCAGATTTATATATTCCAAATGAAAGATGTAGGGAGCTAATCAGTGTTTCTCGTTTTAGTGTGGGTTTTGGGATTTATTGTACATGGACATCTTTGAGCCTGTTCATTCTAAGTCTTCTTTGACAAAAGGAATGGTTGATATCTATGTTGCATAGGGTTGCGTTCCTGCCTCAAAACCCCACATACCTGCTGATCCGACGTTTCAGGGACTTTAGGGGACCATGCCCTCCTCTTTCTGGGCAAAGTTTAGGGCACTTTTAATGGACCGACTCCACGGGCCTTTAATTTTTCAGGGACTCCGAGACATCCCTGTCATTCTGTCTTTCCGGTTAGGCTACAAATTGGCAAAATAAAATTTAAAAATGCCACTTGTAACATGACCCTGTTTGTATATGAAACTATTCCGAGCAGATAGCGAAGGTAGACAATCAGTGTTAAAAATTACACCGTCCCCAAGTTGAATCCTCTGGCATGTTTCTTTAAGCTACTATGTGTTGATTTCGGTGTGTACTGTTGACGTTGTCGTTTGTTATTGGGTATGCAACGGAATGTGCAAAATATGATGTTCTCTTTCTGGAACTGTTTGAAATTAGATGGATTATTTTCTGTCACCAGAACTTGGACTTATTCTTTCCCGTA

Fln Alignment:

sp_v1.1_unigene3842___MPNACVSSPVFSCVSYRSISFSEATSSNRRGRGCNNLAFFGWKCRQGISARAVGAIEKESAMAEKPGTFLRDSEGEQLGTSSVRARFEKMIRKAQDDVCAAVEAVDGHSFREDVWSRPGGGGGISRVLQDGNVWEKAGVNVSVVYGSMPPEAYRAAKPVNSSDNGNRLSAIPFFAAGISSVMHPKNPFAPTVHFNYRYFETDAPKDVEGAPRQWWFGGGTDLTPSYVFEEDVKHFHMVQKEACDKFDPSFYPRFKKWCDDYFFIKHRGERRGVGGIFFDDLNENDQEMLLAFSTECTNSVIPAYIPIIEKRKDMPFTEDHKSWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILMSLPLTARWEYDHRPVEGSEEWKLLDACINPKEWLQ
B8LL28______________MPNACVSCPVFSCVSYSSISLSQATSSNRRGSACNNLAFSGWKCRRQIFARAVGAIEKESAMAEKPGTFLRDSEGEPSGTNSVRARFEKMIRKAQDDVCVAVEAVDGHGFREDVWSRPGGGGGISRVLQDGNVWEKAGVNVSVVYGNMPPEAYRAAKPVNSPDNGSRLGSIPFFAAGISSVMHPKNPFAPTVHFNYRYFETDAPKDVEGAPRQWWFGGGTDLTPSYVFEEDVKHFHMVQKQACDKFDPSFYPRFKNWCDDYFFIKHRGERRGLGGIFFDDLNENDQEMLLAFSTECTNSVIPAYIPIVEKRKDMPFTERHKSWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILMSLPLTARWEYDHQPVEGSEEWKLLDACINPKEWLQ

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
201		23		76	1.0
207	84		15		0.999986
208	15	7		76	0.999983
212	76		7		0.999983
213		76	7	15	0.999983
214		84	15		0.999986
218		84	15		0.999986
219	84			15	0.999986
220	76	23			1.0
221	15			84	0.999986
226	15			84	0.999986
395	87	12			0.992554
398		12		87	0.992554
400			87	12	0.992554
405	87	12			0.992554
406	87			12	0.992554
407			87	12	0.992554
408			12	87	0.992554
409			12	87	0.992554
411	87			12	0.992554
414		12	87		0.992554
416		12	87		0.992554
417	87			12	0.992554
418		12	87		0.992554
419	12	87			0.992554
533		16	83		0.994512
535	83	16			0.994512
546		83		16	0.994512
572	75	25			1.0
574			75	25	1.0
576	75			25	1.0
578	25		75		1.0
579	12	87			0.992554
580		25	75		1.0
583	75		25		1.0
584	75	25			1.0
585		12		87	0.992554
588		28		71	1.0
591	85	14			0.993533
600		14		85	0.993533
606	14			85	0.993533
618			85	14	0.993533
635	85		14		0.993533
637		85	14		0.993533
639	14	85			0.993533
641		14		85	0.993533
648		85		14	0.993533
649		28		71	1.0
651	85		14		0.993533
658	14		85		0.993533
659	14		85		0.993533
662	85		14		0.993533
663		85	14		0.993533
665	14		85		0.993533
670	85		14		0.993533
690			14	85	0.993533
693		85	14		0.993533
705	14		85		0.993533
718	77	11		11	0.968132
719	88		11		0.923564
720	88			11	0.923564
721	88		11		0.923564
729			11	88	0.923564
734		88	11		0.923564
738	11			88	0.923564
739		11	88		0.923564
741		11	88		0.923564
742	11	88			0.923564
784	11		88		0.923564
1091	89			10	0.999919
1419	20		80		0.995493
1421	80		20		0.995493
1424		80		20	0.995493
1558		14		85	0.993533
1585	11		88		0.923564
1611	11		88		0.923564
1631	75			25	1.0
1632		25		75	1.0
1633	25	75			1.0
1634	75		25		1.0
1635			71	28	1.0
1636			28	71	1.0
1685			25	75	1.0
1813	70		30		1.0
1869	12		87		0.992554
2064	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain