SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3836

Length: 1492 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3836

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=1 Tax=Picea sitchensis RepID=B8LPW6_PICSI	-	-	90%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	0.0	89%
Blast2go	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	89%
Blast2go	Selenocompound metabolism	00450		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen peroxide catabolic process	GO:0042744	Biological Process	89%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	89%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	89%
Blast2go	regulation of starch biosynthetic process	GO:0010581	Biological Process	89%
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	89%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	89%
Blast2go	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	89%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	89%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	89%
Blast2go	Thioredoxin fold	IPR012335	-	89%
Blast2go	Thioredoxin-like fold	IPR012336	-	89%
Blast2go	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	89%
Blast2go	Thioredoxin domain	IPR013766	-	89%
Blast2go	Thioredoxin-like	IPR017936	-	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPW6

Fln msg: your sequence is shorter than subject: 323 - 562

Fln protein: EFWSRGISACAICDGASPLFKGQELAVVGGGDTATEEAVYLTKYARHVHLLVRKDILRASKAMQDRILNNPSVTVHFSTGVIDVVSNNKGQMSGVLLEDLSTGKQWILDVRGLFYGIGHMPNSQILEGQVELDSAGYVVVKSSGANTSVEGVFAAGDLQDPEWRQAVTAAGSGCMAALSAERYLVKSNLLIEFHQPKTQEAKEDLTDKDVQMGFDISRGKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILSKVIDEFDNEVHIVEIDIEEDPEIAEAAGIMGTPCIQFFKNKEKLKQIAGVKMKREYREFIAANK*

Protein Length: 324

Fln nts: GAATTTTGGAGCAGAGGAATAAGTGCCTGTGCAATTTGTGATGGTGCATCCCCTTTATTTAAAGGTCAAGAGCTCGCAGTTGTTGGAGGTGGTGACACAGCCACAGAAGAAGCAGTATACCTCACTAAATATGCCCGACATGTACATTTGTTAGTGCGAAAAGACATATTGAGAGCATCCAAAGCAATGCAGGACAGAATTCTCAACAATCCCTCTGTTACTGTACACTTCAGTACCGGAGTTATTGATGTTGTAAGCAACAACAAGGGCCAGATGTCTGGGGTTTTACTGGAAGATTTGAGTACTGGTAAACAGTGGATTCTAGATGTCAGGGGTCTCTTTTATGGCATTGGGCATATGCCAAACAGCCAGATTCTTGAAGGCCAGGTTGAACTTGATAGTGCTGGTTATGTGGTTGTGAAAAGCAGTGGAGCTAATACTTCTGTTGAAGGGGTTTTTGCAGCAGGTGATTTGCAGGACCCAGAGTGGAGACAGGCAGTAACGGCAGCTGGATCTGGCTGTATGGCGGCATTGTCTGCTGAACGTTATCTTGTGAAAAGCAATCTTCTCATTGAATTCCATCAGCCCAAGACTCAAGAGGCTAAGGAAGATCTCACTGACAAAGATGTTCAGATGGGCTTTGATATCTCTCGAGGCAAGCATAAGGGTCAGTATGCTCTTCGAAAACTATATCATGAGAGTCCGCGGCTTATCTGTGTGCTTTACACCTCCCCGACATGTGGACCTTGCAGAACTCTTAAACCCATTCTCAGCAAGGTGATTGATGAATTTGACAATGAAGTACATATTGTTGAAATTGACATAGAAGAGGATCCAGAAATTGCTGAGGCTGCCGGGATAATGGGAACTCCCTGCATCCAATTTTTCAAGAATAAAGAAAAACTGAAGCAAATTGCAGGAGTTAAAATGAAGAGGGAGTACCGGGAATTCATTGCAGCGAATAAGTGA___TGTTGCACAATGCTAGGAAAGTATGTACATAGATTTTTTTAATTTCACTATATATTGGTTGCTTAAGATTATGATTATGGCAAGCTTTTGTCACAAAATGACTCAATATTCCCAATTTCTTACGGAGGATTCTCTCCTCAAGTTTAAGATTCTGCCAATGGTACCTTAGATGGCAACATAGACAAAACACTGAGAATCCATCGAAGCCAATAAGTGATGATGCACAGAGCTGGACAAGATTCGGTACAGGATTTTGAAATTTCTTGTAGATTAGTTCAAGGTTTATTACTGGCAAGCTTTGTCACAAAATGACTCAAAATTCTAGCCTTATAAGAAAATTGCTTTCTTCCGTTGTGTAAAATGTGTCTCCAATGTTTACCATTGGCAGCACATTCAGATGCTCATTTTTCTCTTATTTCCAGGGTACTTATAAGAAGAAACATCGGTTACAAGATGAAGAAATCATTGTGATAACTATTTGAATAATATAGGCTATGTTAAAGAGATGAGATGTGTTAGACTA

Fln Alignment:

sp_v1.1_unigene3836___EFWSRGISACAICDGASPLFKGQELAVVGGGDTATEEAVYLTKYARHVHLLVRKDILRASKAMQDRILNNPSVTVHFSTGVIDVVSNNKGQMSGVLLEDLSTGKQWILDVRGLFYGIGHMPNSQILEGQVELDSAGYVVVKSSGANTSVEGVFAAGDLQDPEWRQAVTAAGSGCMAALSAERYLVKSNLLIEFHQPKTQEAKEDLTDKDVQMGFDISRGKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILSKVIDEFDNEVHXXXXXXXXXXXXXXXXXXMGTPCIQFFKNKEKLKQIAGVKMKREYREFIAANK
B8LPW6______________EFWSRGISACAICDGASPLFKGQELAVVGGGDTATEEAIYLTKYARHVHLLVRKDRLRASKAMQDRILNNPSVTVHFCTGVIDVVSNDKGQMSGVLLEDLNTGKQWILDVRGLFYGIGHMPNSQILEGQVELDSAGYVVVKNSGANTSVEGVFAAGDLQDPEWRQAVTAAGSGCMAALSAERYLVKNNLLIEFHQPKTQETKEDLTEKDVQMGFDISRGKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILNKVIDEFDNEVHCVEIDIEEDPEIAEAAGIMGTPCIQFFKNKEKLKQIPGVKMKREYQEFIAANK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
794			14	85	0.993533
795			14	85	0.993533
822		16		83	0.994512
1015		28		71	1.0
1018		71	28		1.0
1019	71		28		1.0
1022	71		28		1.0
1025		28		71	1.0
1026	71			28	1.0
1027		28		71	1.0
1028	28			71	1.0
1345		25		75	1.0
1396	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain