SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3833

Length: 1888 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3833

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tetratricopeptide repeat (TPR)-containing protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A928

Fln msg: your sequence is longer than subject: 483 - 281

Fln protein: MKNVRKEEMTEISERISRASPEEIEAMKARANLQSAYQLQVAQNLKDQGNQLHALRKYSEAAEKYLQARNNLTGIPFSEAKSLFLVSSSNLMSCYLKTGQYEECVQTGSEVLAYDAVNVKALYRRGQAYKQIGKLELAVADLRKAVEVSPDDETIAQALREASTELMEKGGIEDQNGPRIEEIIEEEAVQPTAEKYPQSAPMVTSVTEDVSDDEQGSEDQNGFSEDSFQATNEPNGQMYAESLRNLTENPDMLRTMQSLMKNVDPDSLVALSGGKLSPDMVKTVSGMFGRMSPEEIQNMIKMSSTLSRQNPSTSSRFDDITSGHSTMDSSPQSVSVDNDLFEENQNRVGESSTNLSSSAAFSGMPNFSAEMQEQVRNQMNDPATRQMFTSMIQNMSPEMMASMSEQFGVKLSREDAVKAQSAMASLSPNDLDRLMNWATRLQTAIDYARKIKNWILGRPGLIFAISMLLLAIILHRFGYIGD*

Protein Length: 484

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGCAGCAGAGCAG_-_ATGAAAAATGTACGCAAGGAAGAAATGACTGAAATAAGTGAGCGCATATCAAGGGCTTCACCAGAAGAGATTGAAGCAATGAAGGCTCGTGCAAATCTTCAGTCTGCATATCAATTGCAAGTAGCTCAGAACCTAAAGGATCAGGGAAATCAGCTTCATGCTCTAAGGAAATACAGTGAAGCAGCAGAGAAATATTTGCAAGCAAGGAACAATCTGACAGGAATACCCTTCTCTGAAGCTAAGAGTTTGTTTTTAGTTTCTTCCTCGAATTTAATGTCCTGCTACCTAAAGACTGGGCAGTACGAGGAGTGTGTACAAACAGGTTCAGAGGTTCTGGCATATGATGCAGTGAATGTTAAAGCATTGTATCGCAGAGGCCAAGCCTACAAACAAATTGGAAAGCTAGAATTGGCTGTTGCAGACTTAAGAAAAGCGGTGGAGGTTTCTCCTGACGATGAAACAATAGCACAGGCTTTAAGAGAAGCAAGCACAGAATTAATGGAGAAAGGGGGCATTGAAGATCAAAATGGGCCTCGTATTGAAGAGATAATTGAGGAAGAAGCTGTTCAGCCAACTGCTGAAAAGTATCCGCAGTCGGCTCCTATGGTGACTTCTGTTACAGAAGATGTAAGTGATGATGAGCAGGGGTCAGAAGATCAAAATGGGTTCTCTGAAGATAGCTTTCAAGCAACTAATGAGCCCAATGGGCAGATGTATGCTGAGAGCTTGAGGAACTTGACTGAAAATCCTGACATGTTAAGAACTATGCAGAGTTTGATGAAAAATGTCGACCCAGACTCCTTGGTTGCACTAAGTGGAGGTAAATTGAGCCCTGATATGGTCAAAACTGTATCTGGTATGTTTGGTAGGATGTCACCAGAGGAGATCCAGAATATGATTAAAATGTCGAGCACCTTATCAAGACAAAATCCATCTACTTCATCTAGATTTGATGACATCACAAGTGGACATTCAACCATGGATTCATCTCCACAATCTGTTTCAGTAGATAATGACCTTTTTGAAGAAAATCAGAATAGAGTTGGGGAGTCATCTACAAATTTGAGTTCCAGTGCAGCCTTCTCAGGCATGCCAAACTTTTCTGCAGAAATGCAGGAGCAAGTGAGAAATCAAATGAATGATCCAGCCACAAGACAGATGTTTACGTCAATGATACAAAATATGAGCCCTGAAATGATGGCAAGTATGAGTGAGCAGTTTGGGGTTAAGCTTTCACGTGAGGATGCAGTTAAGGCACAAAGTGCTATGGCCTCTCTTTCTCCCAATGATTTAGACAGATTGATGAATTGGGCAACAAGGCTTCAGACTGCAATTGACTATGCTCGAAAGATCAAGAACTGGATACTAGGAAGGCCAGGTCTTATTTTTGCAATTTCCATGCTGCTTCTTGCTATTATTCTTCATCGGTTTGGATATATTGGAGACTAA___GAAACGATACATCATTTGGATTTTCAAATATTGACGTAGTTGATGCGTGCTTAAACCAATTGAGGAAGCTACTTCAGGCATTCATTTTGATCCTTTATGACCTTATTTCCAGCAATGCCAGCCGTATAGTTAACTGAGAAATGCTGGGAACTCTGCTGGAATTATTTGTCAACAAGGAAGCAGTTGACTTTTGCTTGTGGATTGTACTGTGGTACATGGTATAAATCTATTAGCTATGTCGATTATTTTTGGCATCCTCATGCCTTTTATTAAAAACATACGGCTGCTTGAGAATGATGTTTTCCTTTGTGTTAGGTCAGTTTTTGTCCAAATCATGTGGCACCTTTGGTTAATAACATTATCCACATCAATTTGTACATGGAATCTTCTTACGTTTA

Fln Alignment:

sp_v1.1_unigene3833___MVTSVTEDVSDDEQGSEDQNGFSEDSFQATNEPNGQMYAESLRNLTENPDMLRTMQSLMKNVDPDSLVALSGGKLSPDMVKTVSGMFGRMSPEEIQNMIKMSSTLSRQNPSTSSRFDDITSGHSTMDSSPQSVSVDNDLFEENQNRVGEXXXXXXXXXXXXGMPNFSAEMQEQVRNQMNDPATRQMFTSMIQNMSPEMMASMSEQFGVKLSREDAVKAQSAMASLSPNDLDRLMNWATRLQTAIDYARKIKNWILGRPGLIFAISMLLLAIILHRFGYIGD
D5A928______________MVTSVIEDISDGEQGSEDQKGFSKDRFQAPNVPNGEMYAESLGNLSENPDMFRTMQSLMENVDPDSLVALSGGKLTPDMVKTVSGMFGRMSPEELQNMAKMSSTLPKQNQATSSTFDDMTNGHSTMGPSPQSVSVNNGLFEENQNRVGESSMNLSSSAAFSGMPSFSSEMQEQMRNQMNDPATRQMFSSMIKNMSPEMMASMSEQFGFKLSHEDAVNAQNAMASLSPNDLDRLMNWAARLQSGINYARKIKNWVLGRPGLIFAISMLLLAIILHRFGYIGD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1303	16		83		0.994512
1474		12	87		0.992554
1475	12		87		0.992554
1476	87	12			0.992554
1478	87	12			0.992554
1479	12			87	0.992554
1482	12			87	0.992554
1497	25		75		1.0
1601		90		10	0.90298
1631	76	15	7		0.999983
1640	84	15			0.999986
1646	15		84		0.999986
1670	90			10	0.90298
1672	10	90			0.90298
1675		11		88	0.923564
1677		11	88		0.923564
1863	10			90	0.90298
1864	10			90	0.90298
1866			90	10	0.90298
1879	37			62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain