SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3820

Length: 2639 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3820
CGTCGTGACCTTGGCTGTCACTCAACCGTCGCTTGAAACCCTCCTCCGTCGACATTAGAGGCTTTAAATTTGGTCGTCGTGACCTTGGCTGTCACTCAAGATTGTGTTCAGTCGATCACTTGGAGCTGTCCGGTTGAGTCCAGCGATTTGCTCTGTAATCTGCGTAATTACGGCTTCCTTTGTGTTTAAAAGTTCCGGGTTCGAATTTCTATTGGCCCGGTGTTTACTTTGGTCTGGATTGGTAGTTAAGTGGAAAGCTTCGAGTCGGAGGTCTAATATTGTGAAAAGTACCAGGCGATTTGGTTTGACGACAGGCGATCTATATTGCTTTTCAAGAAATATGGTCATTAAGGGTCTGCATATCCCAAAGCTTGCTAGCTTGACATGAACTTCTGAAGCAGGACTTAAATTTCGAACGAGGTATCGGATTGTAGATACAATACAAAAACAAAGAAGCTTCACGCGTGCTGTACTGAACAGCAAAAACCTCAGTCAGAAATAAAGATAAGTAAGATTTAAGTGATATTGAACAAACCATGTATCCAAGCAACAGGATCAATCCGTCGGCTCCACCAAATATGCAAGGGCTTCTAAATTCAGGAATTGCCCCAAATTTCAATACGGGCAATGGCACCAGTCATGGAAGTGGTGTTTTTTATATGAATGACCGACTGATGGCGGGATCTAGCAGTGTAGAACACATGTCTGCTCAGACGGGAGTTGGCAGCTTCTGCCCTCATCCAGCTGTACGTGTTGGGCCTGAAGCTGAACACTTGCAGCCTTTTTGTGGCAGTGGAGCAGGAGGTTTGGTTGAGAGCAACTATGGAAGGGCAAATCATTTAACTGATGTTGGAAGAAGAGTTTGTAAACGAAAAATTTAGAAGATATATCAGGGCATTCATCCTATGATGGTCCAACACATTCTTTTAACTGGGAAGATGGTGTTTCGTCAAGGTTCACAGGTCCCATAAGACATGATATGGGCAGTATATCAAGTTTTTCTGCCTCTGGAGTGACACCTGTTAGGGTTAGAGAATGGGAAGAACTGGTGGTGTCAAGGCCTGGACTTATGGTTGGTTCAAGCAGGGCTGCAGGTTACAGGAACAGTGCTTTATCTGTGACCCCGGCATTGGAAGGTGCTCAAAGGAGTGTCCGAAGCAGGTCTAATCCTACACGTTATCAGGACCCAAATATATTACATTTGCGACCTTCAGGCAATCATGCTCGACATTTTCCGTCAAGAAGTCATTCCTCAGTTGAACAGCCTGCAAACATGGACCCAGCTGAGACTGGTGCCAGTGCCATTATGCATGAAACCTGTCAGCTTCCAACCTCATCTGCCTTTCAAAGGAGGAATCTAGTTCTAGGTGGTTGGAATGAAAATATGCCCAGGGCTAGCAGTAATTTCAGCCCCATTTCTATTGAGAGGGACAGGCCAACTTCTCTGCTTTCTGCAGCCAGCTCAAGCAGCACTGTCACTGGAGTACCTAATCAAGGATGGTATGTGCCAGGTGCTGACAACCGGCTGTCAAATGATGATCTATGGACTCCAATGAATAGAAACATGAGTGGTAATACATATACAGCTCAAATATCTGCTGGTTCAGTTCCCAATTCAAGAACAGCCATTCCATGGCGTCGTCCACAAAGCCTACGCATGCAAGTTGCTGGGGCAAATTCTGGTCTTGCACAGGAATCTGTGTCTTCTTTGAGGCCTGGACAAAGCAATCATTTTTCTCGGCTGTCTGGGTCTGTTGCTCCTCCACTGGATATGGTTCCCAATTCTGCAGCAGGGTTGCAAGGTCCTCATTACTTAAGATCATTGGTGGAACATCGTGATCAGAATGCTAGACCTATTATACGAAGCATTTTAGATGTTTCCTTTGAAAGACTCCAAACTCTACAGAACGATGATGGTGGGCATAATAGAATCATGCCTGAGGACGTCTTGGTCTTTGAACGGTCAGCATATTATGGTTCTGTTGACTTATATGATCGGCATAGGGATATGCGACTAGATGTGGATAACATGACCTATGAGGAATTATTGGCCTTGGAGGAACGCATTGGTAATGTGAGTACAGGGCTCACTGATGAATCTTTTGCAAAGTGTCTGAAGATAAGAACATATTCTTCAAGCACAGAATCATCTGCTGCAGACGAAACCTCTCAAAAGTGCAGTATATGTCAGGAAGAATACGAGGACAAGGATGAGCTTGGAACTCTTCAATGTGGACATGATCACCATACAAAATGCATCAAGCAATGGTTGTTGCAGAAAAACGAGTGTCCGATTTGCAAGGCACCAGCTTTGAAGAAATAATTGTGGGGATAAATGGAGGGCTAACTACAACTGGGTCCATATTCTTTCTCTAAGCAGCAGTTCATTCTTTTCAAAACAGCAGTCAAGCAGTTTCATTATAATTCAACAACAGATGTTGAAGTTCATTCATGCATCTCATGTTATTTATCGATCTTACGGACACTCTGTACAGATAGGCAACAGTTGTCCATTTATCTCATTTCAGTTTAGCAAGTTAAACTGGCATGTATAGTTAATCTGGCTTCCTCACTTCTGAAAAATCTGGGAAGCTTTTTACATGTCAGCCATGTAAATGTTCGTTCATTTTGTGCAAAGC

Ace file of the UniGene sp_v1.1_unigene3820

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R796_RICCO	-	-	1.0e-38	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	protein binding	-	-	0.0	52%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	52%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	52%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADP2

Fln msg: your sequence is longer than subject: 448 - 282

Fln protein: MGSISSFSASGVTPVRVREWEELVVSRPGLMVGSSRAAGYRNSALSVTPALEGAQRSVRSRSNPTRYQDPNILHLRPSGNHARHFPSRSHSSVEQPANMDPAETGASAIMHETCQLPTSSAFQRRNLVLGGWNENMPRASSNFSPISIERDRPTSLLSAASSSSTVTGVPNQGWYVPGADNRLSNDDLWTPMNRNMSGNTYTAQISAGSVPNSRTAIPWRRPQSLRMQVAGANSGLAQESVSSLRPGQSNHFSRLSGSVAPPLDMVPNSAAGLQGPHYLRSLVEHRDQNARPIIRSILDVSFERLQTLQNDDGGHNRIMPEDVLVFERSAYYGSVDLYDRHRDMRLDVDNMTYEELLALEERIGNVSTGLTDESFAKCLKIRTYSSSTESSAADETSQKCSICQEEYEDKDELGTLQCGHDHHTKCIKQWLLQKNECPICKAPALKK*

Protein Length: 449

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCGTCGCTTGAAACCCTCCTCCGTCGACATTAGAGGCTTTAAATTTGGTCGTCGTGACCTTGGCTGTCACTCAAGATTGTGTTCAGTCGATCACTTGGAGCTGTCCGGTTGAGTCCAGCGATTTGCTCTGTAATCTGCGTAATTACGGCTTCCTTTGTGTTTAAAAGTTCCGGGTTCGAATTTCTATTGGCCCGGTGTTTACTTTGGTCTGGATTGGTAGTTAAGTGGAAAGCTTCGAGTCGGAGGTCTAATATTGTGAAAAGTACCAGGCGATTTGGTTTGACGACAGGCGATCTATATTGCTTTTCAAGAAATATGGTCATTAAGGGTCTGCATATCCCAAAGCTTGCTAGCTTGACATGAACTTCTGAAGCAGGACTTAAATTTCGAACGAGGTATCGGATTGTAGATACAATACAAAAACAAAGAAGCTTCACGCGTGCTGTACTGAACAGCAAAAACCTCAGTCAGAAATAAAGATAAGTAAGATTTAAGTGATATTGAACAAACCATGTATCCAAGCAACAGGATCAATCCGTCGGCTCCACCAAATATGCAAGGGCTTCTAAATTCAGGAATTGCCCCAAATTTCAATACGGGCAATGGCACCAGTCATGGAAGTGGTGTTTTTTATATGAATGACCGACTGATGGCGGGATCTAGCAGTGTAGAACACATGTCTGCTCAGACGGGAGTTGGCAGCTTCTGCCCTCATCCAGCTGTACGTGTTGGGCCTGAAGCTGAACACTTGCAGCCTTTTTGTGGCAGTGGAGCAGGAGGTTTGGTTGAGAGCAACTATGGAAGGGCAAATCATTTAACTGATGTTGGAAGAAGAGTTTGTAAACGAAAAATTTAGAAGATATATCAGGGCATTCATCCTATGATGGTCCAACACATTCTTTTAACTGGGAAGATGGTGTTTCGTCAAGGTTCACAGGTCCCATAAGACATGAT_-_ATGGGCAGTATATCAAGTTTTTCTGCCTCTGGAGTGACACCTGTTAGGGTTAGAGAATGGGAAGAACTGGTGGTGTCAAGGCCTGGACTTATGGTTGGTTCAAGCAGGGCTGCAGGTTACAGGAACAGTGCTTTATCTGTGACCCCGGCATTGGAAGGTGCTCAAAGGAGTGTCCGAAGCAGGTCTAATCCTACACGTTATCAGGACCCAAATATATTACATTTGCGACCTTCAGGCAATCATGCTCGACATTTTCCGTCAAGAAGTCATTCCTCAGTTGAACAGCCTGCAAACATGGACCCAGCTGAGACTGGTGCCAGTGCCATTATGCATGAAACCTGTCAGCTTCCAACCTCATCTGCCTTTCAAAGGAGGAATCTAGTTCTAGGTGGTTGGAATGAAAATATGCCCAGGGCTAGCAGTAATTTCAGCCCCATTTCTATTGAGAGGGACAGGCCAACTTCTCTGCTTTCTGCAGCCAGCTCAAGCAGCACTGTCACTGGAGTACCTAATCAAGGATGGTATGTGCCAGGTGCTGACAACCGGCTGTCAAATGATGATCTATGGACTCCAATGAATAGAAACATGAGTGGTAATACATATACAGCTCAAATATCTGCTGGTTCAGTTCCCAATTCAAGAACAGCCATTCCATGGCGTCGTCCACAAAGCCTACGCATGCAAGTTGCTGGGGCAAATTCTGGTCTTGCACAGGAATCTGTGTCTTCTTTGAGGCCTGGACAAAGCAATCATTTTTCTCGGCTGTCTGGGTCTGTTGCTCCTCCACTGGATATGGTTCCCAATTCTGCAGCAGGGTTGCAAGGTCCTCATTACTTAAGATCATTGGTGGAACATCGTGATCAGAATGCTAGACCTATTATACGAAGCATTTTAGATGTTTCCTTTGAAAGACTCCAAACTCTACAGAACGATGATGGTGGGCATAATAGAATCATGCCTGAGGACGTCTTGGTCTTTGAACGGTCAGCATATTATGGTTCTGTTGACTTATATGATCGGCATAGGGATATGCGACTAGATGTGGATAACATGACCTATGAGGAATTATTGGCCTTGGAGGAACGCATTGGTAATGTGAGTACAGGGCTCACTGATGAATCTTTTGCAAAGTGTCTGAAGATAAGAACATATTCTTCAAGCACAGAATCATCTGCTGCAGACGAAACCTCTCAAAAGTGCAGTATATGTCAGGAAGAATACGAGGACAAGGATGAGCTTGGAACTCTTCAATGTGGACATGATCACCATACAAAATGCATCAAGCAATGGTTGTTGCAGAAAAACGAGTGTCCGATTTGCAAGGCACCAGCTTTGAAGAAATAA___TTGTGGGGATAAATGGAGGGCTAACTACAACTGGGTCCATATTCTTTCTCTAAGCAGCAGTTCATTCTTTTCAAAACAGCAGTCAAGCAGTTTCATTATAATTCAACAACAGATGTTGAAGTTCATTCATGCATCTCATGTTATTTATCGATCTTACGGACACTCTGTACAGATAGGCAACAGTTGTCCATTTATCTCATTTCAGTTTAGCAAGTTAAACTGGCATGTATAGTTAATCTGGCTTCCTCACTTCTGAAAAATCTGGGAAGCTTTTTACATGTCAGCCATGTAAATGTTCGTTCATTTTGTGCAAAGC

Fln Alignment:

sp_v1.1_unigene3820___LDVDNMTYEELLALEERIGNVSTGLTDESFAKCLKIRTYXXXXXXXXXXXXXQKCSICQEEYEDKDELGTLQCGHDHHTKCIKQWLLQKNECPIC
D5ADP2______________VDPDNMLYEELVALSEVVGTESRGLAPDLISS-LPLSKFVPETPSSSNS---ERCVICRLEYEGGDIILTLPCKHQYHSDCIKNWLQIKKVCPVC

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1444			90	10	0.90298
1446		90	10		0.90298
1447		90	10		0.90298
1455	20	80			0.999996
1629	87	12			0.992554
1711		16		83	0.994512
1716	16			83	0.994512
1718		16		83	0.994512
1730	83			16	0.994512
1733	80	20			0.995493
1734	80			20	0.995493
1735		20	80		0.995493
1736	20	80			0.995493
1973	12		87		0.992554
1975		87	12		0.992554
1976	87		12		0.992554
2216		78	21		1.0
2316		85		14	0.993533
2462	85			14	0.993533
2463		14		85	0.993533
2468		80	20		0.995493
2470		80	20		0.995493
2475			20	80	0.995493
2477		20		80	0.995493
2478	20			80	0.995493
2479			20	80	0.995493
2480	80		20		0.995493
2481		20		80	0.995493
2509			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain