SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3802

Length: 1068 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3802 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ThylakoidFormat domain containing protein	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	chloroplast-localized ptr -binding protein1	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	86%
Blast2go	protein import into chloroplast thylakoid membrane	GO:0045038	Biological Process	86%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	86%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	86%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	plastid outer membrane	GO:0009527	Cellular Component	86%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	plastid inner membrane	GO:0009528	Cellular Component	86%
Blast2go	stromule	GO:0010319	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Photosystem II Psp29, biogenesis	IPR017499	-	0.0	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPI7

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 283 - 304

Fln protein: MSGSLASVCPTGFQRFTERTTMLQGIRPSNTICSLRWRTITGHDQLLFTVNINSRSLPKASSSLSVTRCCMSVTASDIPTVADTKSAFIKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDREAIFRAYIYALKEDPEQYRSDAKKLEEWAGSQDAKSIVEFQSRDGEVEGILKDISERAREKKNFSYSRFFAIGLFRLLERANATDPVVLEKLCAALNISKPSVDRDLDIYRNILSKLVQSKELLKEYVEREKKKRT

Protein Length: 284

Fln nts: GAGCATATCGGATAAGCCTGTGGCATCAGCGATGGGGCAAGCATTTCATTGATAGACTGAATTTCTGTCGATACACCTTTCTTGCTTCGATACCTCAAGCTGTCTGTGACTCTACACAGAAATGAACTACTACATTTGATTTAATTGGACTGGAGACAATCAGACAACAAACAGAGATACATATTTGGGTGATAAAAGGAAATTTGATATAGATTGAAC_-_ATGTCAGGGTCCCTGGCATCAGTTTGCCCAACTGGGTTTCAGAGATTCACAGAAAGGACAACAATGCTACAGGGGATTCGCCCATCTAATACTATTTGCAGTCTTCGATGGCGAACAATCACTGGCCACGACCAACTACTGTTTACTGTTAATATAAACAGCCGCTCACTCCCAAAGGCTTCCTCTTCACTATCTGTGACCCGATGCTGCATGTCTGTTACGGCTTCTGACATTCCTACAGTTGCAGATACCAAGTCAGCATTCATAAAAGCATATAAAAGGCCTATTCCCAGCATATACAACAATGTTATACAAGAGTTAATAGTACAGCAACACCTGATGCGTTACAAGAGGACATATCAGTATGATGCAGTATTTGCACTAGGTTTTGTCAGTGTCTATGACCAACTTATGGATGGATACCCCAGTGATGGTGACCGCGAAGCAATCTTCAGAGCGTACATATATGCATTGAAAGAGGATCCTGAACAGTACAGGAGTGATGCCAAAAAGCTGGAAGAATGGGCTGGCTCACAGGATGCAAAGTCTATTGTTGAATTTCAATCTAGAGATGGAGAGGTTGAGGGAATATTGAAAGACATTTCTGAACGAGCGAGGGAAAAGAAAAATTTTAGCTACAGTCGCTTCTTTGCAATTGGATTGTTCCGGCTACTTGAACGGGCAAATGCTACAGATCCTGTTGTGCTGGAGAAGTTATGTGCAGCCTTAAATATAAGCAAGCCCAGTGTAGACAGAGACCTTGATATCTATAGAAACATCCTTTCAAAACTGGTGCAGTCAAAGGAGCTTTTGAAAGAATATGTTGAAAGAGAAAAGAAAAAGAGAACG

Fln Alignment:

sp_v1.1_unigene3802___MSGSLASVCPTGFQRFTERTTMLQGIRPSNTI-CSLRWRTITGHDQLLFTVNINXXXXXXXXXXXSVTRCCMSVTASDIPTVADTKSAFIKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDREAIFRAYIYALKEDPEQYRSDAKKLEEWAGSQDAKSIVEFQSRDGEVEGILKDISERAREKKNFSYSRFFAIGLFRLLERANATDPVVLEKLCAALNISKPSVDRDLDIYRNILSKLVQSKELLKEYVEREKKKRT
A9NPI7______________MAGALASVCPTGFRRLTERTTMLQGIRPSNNIFSSLRWRTITGHDQLLLTVNISSRSLPKASSSLSVTRCSMSITASDIPTVAETKSAFLKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDSEAIFRAYINALKEDPEQYRSDAKKLEEWASSQDAKSIVEFQSRDGEVEGILKDIAERAREKKIFSYSRFFAIGLFRLLERANATDPVVLEKLCGALNISKPSVDRDLDIYRNILSKLVQSKELLKEYVEREKKKRT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
55		85		14	0.993533
222	33			66	0.997452
940		21		78	1.0
997	82	17			1.0
998		17	5	76	1.0
1000		17	82		1.0
1002		82		17	1.0
1022		18	81		0.999994
1023	80	20			0.999999
1024	80	20			0.999999
1026	20			70	0.999999
1027	25		62		1.0
1028	42	57			1.0
1029	28			71	1.0
1031			62	25	1.0
1035		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain