SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3789

Length: 2192 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene3789
TTTTTGTAAGAGTTCTGTGTGACCAGGCGAGGCGGAAGCAGCCATGGCCTACATAGCAGTTTTGTTTTTACTTCTTGTGTTGTTATCGCCATTCATTGACTCAACCTTAGGGGCTAAACAGTCTTATGTGGTATACTTGGGAGGACAGCATGATGAGAGTCTGGAACACGAACTGGTAGCTGATTCTCATCATGGGCTTTTGGGGTCAATACTGGGAAGTAAAGAGACAGCCAAGGAAGCAATATTCTACTCTTATACAAGATCCATCAATGGTTTTGCTGCTACTCTTGAAGAAAAACACGCCCACGCTCTCTCAGAGCTCCCACAGGTACTGTCTGTGTTTGTTAACAGAGGAAGAACTCTGCACACAACTAATTCATGGGGATTTCTAGGCTTAGAGGAAAATGGTGGTGGAGAGTCTGAAACTGAAGTAATTTCTCGCAACTCTCTGTGGAGAAAGTCTAATTTTGGGAAGGACGTTATCGTTGCTAACTTAGATACAGGGGTGTGGCCTGAATCTAAAAGTTTCGATGACACCGGTTATGGGCATGTTCCTTCTCGATGGAAAGGGATCTGCCAAGAAGGCACAAATTTCACTGCAGCACAATGCAACAGGAAATTGATTGGAGCCAGGTACTTCATCAAGGGATATGAGGCTGCAAATGGGCCTTTCAATATAACAGGCGATTTTCTTTCTCCACGAGATGCAGAGGGACATGGTACTCATACTTTGTCTACTGCGGGTGGGAATTTTGTGAAAAATGCAAGTGTAAATGGATATGGAAAAGGGATTGCAAAAGGAGGAGCTCCTCATGCTAGAGTTGCAGCCTACAAAGTCTGTTGGGGTTCTTGCTATGATGCAGATATTCTTGCCGGCTTCGATGCAGGGATACATGACGGAGTTGATGTGTTCTCTGTTTCGGTTGGAGCCTACGCTCATAATTATTTTCAGGATGCACTTGCAATTGGAGCGTTCCATGCAGTCCAAAGAGGAAGGGTAGTTGTCTGTTCTGCTGGAAATTCTGGTCCAGATCCGGGGTCAGTTGAAAATGTGGCACCATGGATCATAACTGTGGGAGCAAGCAGCCTTAACAGACAATTTCCTTCGGGTGCTGTTCTTGGAAACAACAAGACATACGTAGGACAAAGCATATCGAAGTTCCGGTTACCAGAGAAAAAATTGTATCCTCTGGTATCTTCAATTGATATTGCAGCTCCAAAGACCGATAAACTATTTGCACAACTTTGCATTGCCGGATCTCTGGATCCCCGGAAAGCTAAAGGAAAGATTGTTGCTTGCCTTCGTGGTACGAATCCAAGAGTTGAGAAAGGTGAAACCGTTCGTGAGGCCGGGGGGTTAGGCATGATTCTCGCTAATGATCCTGCAAGTGCCAACGACGTCTCTGCAGATGCTCACATTCTTCCTGCTACACACTTGACTGCAACTGATGGGGCAAAAGTCTTTAAATACATCAATTCTACAGTGCCCCCTGTTGCTTACATTTCTCCTCCAACAACAAAACGGCTTGCAAAACCAGCTCCAGTGATGACAGCCTTTTCCTCTCAGGGCCCAAATAGTCTTAATCCAGGCATCCTCAAGCCTGATATTACAGCTCCAGGGTTGAACATCCTAGCAGCATATTCAATGGCAGCCTCACCAACTGGTCTCTCATTCGATCGTTCGCATCTACCTTTCAATATAATATCCGGCACATCTATGTCGTGCCCGCATGTTGCTGGTGTTGCAGCTTTATTAAAGGCAGCACATCCTGATTGGAGCCCAGCAGCTATCAGATCTGCCATTATGACTACAGCCACAAAATTGGACAACAAGGAGGAGCCCATCCAGGATGCATCAGGGCAAACAGCAGGTCCTTTTAACTATGGTGCAGGTCATGTTAATCCGAATGTGGCTGGAAATCCAGGGCTAGTCTACGATTTATCGCCCGAAGATTACTACAATTTTTTCTGCGCCTTAAATTATACTTCAGCAGAGATCAGGGCCATAATAGGAAAGGAATTCTCATGTCCAGCACGCCCATCGAAGATAGAAAACCTCAACTATCCTTCCATTACAGTCGCAAAATTGCAGGGAACCGCGATTGTGAAGAGAACGCTGAAAAATGTGGCAAAGGGACATGCGACTTATAAAGCGGAGGTGACTGCTCCTCCTGGAGTTTTGGTGTCAGTAA

Ace file of the UniGene sp_v1.1_unigene3789

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xylem serine proteinase 1, putative n=1 Tax=Ricinus communis RepID=B9SF18_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	subtilisin-like protease	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	68%
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	68%
Blast2go	catalytic activity	GO:0003824	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	68%
Blast2go	Protease-associated domain, PA	IPR003137	-	68%
Blast2go	Proteinase inhibitor I9	IPR010259	-	68%
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	68%
Blast2go	Peptidase S8, subtilisin, Ser-active site	IPR023828	-	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: STOP codon was not found. Distance to subject end: 24 aas, Unexpected STOP codon in 5 prime region,

Fln protein: MAYIAVLFLLLVLLSPFIDSTLGAKQSYVVYLGGQHDESLEHELVADSHHGLLGSILGSKETAKEAIFYSYTRSINGFAATLEEKHAHALSELPQVLSVFVNRGRTLHTTNSWGFLGLEENGGGESETEVISRNSLWRKSNFGKDVIVANLDTGVWPESKSFDDTGYGHVPSRWKGICQEGTNFTAAQCNRKLIGARYFIKGYEAANGPFNITGDFLSPRDAEGHGTHTLSTAGGNFVKNASVNGYGKGIAKGGAPHARVAAYKVCWGSCYDADILAGFDAGIHDGVDVFSVSVGAYAHNYFQDALAIGAFHAVQRGRVVVCSAGNSGPDPGSVENVAPWIITVGASSLNRQFPSGAVLGNNKTYVGQSISKFRLPEKKLYPLVSSIDIAAPKTDKLFAQLCIAGSLDPRKAKGKIVACLRGTNPRVEKGETVREAGGLGMILANDPASANDVSADAHILPATHLTATDGAKVFKYINSTVPPVAYISPPTTKRLAKPAPVMTAFSSQGPNSLNPGILKPDITAPGLNILAAYSMAASPTGLSFDRSHLPFNIISGTSMSCPHVAGVAALLKAAHPDWSPAAIRSAIMTTATKLDNKEEPIQDASGQTAGPFNYGAGHVNPNVAGNPGLVYDLSPEDYYNFFCALNYTSAEIRAIIGKEFSCPARPSKIENLNYPSITVAKLQGTAIVKRTLKNVAKGHATYKAEVTAPPGVLVSV

Protein Length: 717

Fln nts: TTTTTGTAAGAGTTCTGTGTGACCAGGCGAGGCGGAAGCAGCC_-_ATGGCCTACATAGCAGTTTTGTTTTTACTTCTTGTGTTGTTATCGCCATTCATTGACTCAACCTTAGGGGCTAAACAGTCTTATGTGGTATACTTGGGAGGACAGCATGATGAGAGTCTGGAACACGAACTGGTAGCTGATTCTCATCATGGGCTTTTGGGGTCAATACTGGGAAGTAAAGAGACAGCCAAGGAAGCAATATTCTACTCTTATACAAGATCCATCAATGGTTTTGCTGCTACTCTTGAAGAAAAACACGCCCACGCTCTCTCAGAGCTCCCACAGGTACTGTCTGTGTTTGTTAACAGAGGAAGAACTCTGCACACAACTAATTCATGGGGATTTCTAGGCTTAGAGGAAAATGGTGGTGGAGAGTCTGAAACTGAAGTAATTTCTCGCAACTCTCTGTGGAGAAAGTCTAATTTTGGGAAGGACGTTATCGTTGCTAACTTAGATACAGGGGTGTGGCCTGAATCTAAAAGTTTCGATGACACCGGTTATGGGCATGTTCCTTCTCGATGGAAAGGGATCTGCCAAGAAGGCACAAATTTCACTGCAGCACAATGCAACAGGAAATTGATTGGAGCCAGGTACTTCATCAAGGGATATGAGGCTGCAAATGGGCCTTTCAATATAACAGGCGATTTTCTTTCTCCACGAGATGCAGAGGGACATGGTACTCATACTTTGTCTACTGCGGGTGGGAATTTTGTGAAAAATGCAAGTGTAAATGGATATGGAAAAGGGATTGCAAAAGGAGGAGCTCCTCATGCTAGAGTTGCAGCCTACAAAGTCTGTTGGGGTTCTTGCTATGATGCAGATATTCTTGCCGGCTTCGATGCAGGGATACATGACGGAGTTGATGTGTTCTCTGTTTCGGTTGGAGCCTACGCTCATAATTATTTTCAGGATGCACTTGCAATTGGAGCGTTCCATGCAGTCCAAAGAGGAAGGGTAGTTGTCTGTTCTGCTGGAAATTCTGGTCCAGATCCGGGGTCAGTTGAAAATGTGGCACCATGGATCATAACTGTGGGAGCAAGCAGCCTTAACAGACAATTTCCTTCGGGTGCTGTTCTTGGAAACAACAAGACATACGTAGGACAAAGCATATCGAAGTTCCGGTTACCAGAGAAAAAATTGTATCCTCTGGTATCTTCAATTGATATTGCAGCTCCAAAGACCGATAAACTATTTGCACAACTTTGCATTGCCGGATCTCTGGATCCCCGGAAAGCTAAAGGAAAGATTGTTGCTTGCCTTCGTGGTACGAATCCAAGAGTTGAGAAAGGTGAAACCGTTCGTGAGGCCGGGGGGTTAGGCATGATTCTCGCTAATGATCCTGCAAGTGCCAACGACGTCTCTGCAGATGCTCACATTCTTCCTGCTACACACTTGACTGCAACTGATGGGGCAAAAGTCTTTAAATACATCAATTCTACAGTGCCCCCTGTTGCTTACATTTCTCCTCCAACAACAAAACGGCTTGCAAAACCAGCTCCAGTGATGACAGCCTTTTCCTCTCAGGGCCCAAATAGTCTTAATCCAGGCATCCTCAAGCCTGATATTACAGCTCCAGGGTTGAACATCCTAGCAGCATATTCAATGGCAGCCTCACCAACTGGTCTCTCATTCGATCGTTCGCATCTACCTTTCAATATAATATCCGGCACATCTATGTCGTGCCCGCATGTTGCTGGTGTTGCAGCTTTATTAAAGGCAGCACATCCTGATTGGAGCCCAGCAGCTATCAGATCTGCCATTATGACTACAGCCACAAAATTGGACAACAAGGAGGAGCCCATCCAGGATGCATCAGGGCAAACAGCAGGTCCTTTTAACTATGGTGCAGGTCATGTTAATCCGAATGTGGCTGGAAATCCAGGGCTAGTCTACGATTTATCGCCCGAAGATTACTACAATTTTTTCTGCGCCTTAAATTATACTTCAGCAGAGATCAGGGCCATAATAGGAAAGGAATTCTCATGTCCAGCACGCCCATCGAAGATAGAAAACCTCAACTATCCTTCCATTACAGTCGCAAAATTGCAGGGAACCGCGATTGTGAAGAGAACGCTGAAAAATGTGGCAAAGGGACATGCGACTTATAAAGCGGAGGTGACTGCTCCTCCTGGAGTTTTGGTGTCAGTAA

Fln Alignment:

sp_v1.1_unigene3789___GAKQSYVVYLGGQHDES--LEHELVADSHHGLLGSILGSKETAKEAIFYSYTRSINGFAATLEEKHAHALSELPQVLSVFVNRGRTLHTTNSWXXXXXXXXXXXXXXXXVISRNSLW-RKSNFGKDVIVANLDTGVWPESKSFDDTGYGHVPSRWKGICQEGTNFTAAQCNRKLIGARYFIKGYEAANGPFNITGDFLSPRDAEGHGTHTLSTAGGNFVKNASVNGYGKGIAKGGAPHARVAAYKVCW-GSCYDADILAGFDAGIHDGVDVFSVSVGAYAHNYFQDALAIGAFHAVQRGRVVVCSAGNSGPDPGSVENVAPWIITVGASSLNRQFPSGAVLGNNKTYVGQSISKFR--LPEKKLYPLVSSIDIAAPKTDKLFAQLCIAGSLDPRKAKGKIVACLRGTNPRVEKGETVREAGGLGMILANDPASANDVSADAHILPATHLTATDGAKVFKYINSTVPPVAYISPPTTKRLAKPAPVMTAFSSQGPNSLNPGILKPDITAPGLNILAAYSMAASPTGLSFDRSHLPFNIISGTSMSCPHVAGVAALLKAAHPDWSPAAIRSAIMTTATKLDNKEEPIQD-ASGQTAGPFNYGAGHVNPNVAGNPGLVYDLSPEDYYNFFCALNY
C0PPS1______________GVKKTYVVHMAKSQMPAGFTSHE---HWYASAVKSVLSEEE--EPSILYNYDDAFHGFAARLNAAQAEALEKTHGILGIYPETVYELHTTRT-----------PQFLGLETAESGMWPEKANFGHDVVIGVLDTGVWPESLSFNDRGMGPVPAHWKGACESGTNFTASHCNKKLIGARFLSRGYEAAVGPINETAEFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGTARGMATRARIAAYKVCWVGGCFSTDILAALDKAVADGVNVLSLSLGGGLEPYYRDSISLGTFGAMEKGIFVSCSAGNGGPDPISLSNVAPWIATIGAGTLDRDFPAYVELGNGLNFTGVSLYHGRRGLPSGEQVPLVY-FGSNTSAGSRSATNLCFAGSLDRKLVAGKMVVCDRGISARVAKGAVVKSAGGVGMILANTDANGEELVADCHLLPASAVGEANGDAIKHYITSTKNPTATIHFGGTVLGVKPSPVVAAFSSRGPNLVNPEILKPDMIAPGLNILAAWTGITGPTGLSDDLRRVKFNILSGTSMSCPHVTGIAALMKGAHPEWSPAAIKSALMTTAYTVDNMGHKIEDSATANASTPFDHGAGHVDPKSALNPGLIYDISADDYIEFLCSLNY

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
404	83			16	0.994512
405	83			16	0.994512
406	16			83	0.994512
408			83	16	0.994512
414		16	83		0.994512
849	12	87			0.992554
850			12	87	0.992554
851	12			87	0.992554
853		88	11		0.923564
854			11	88	0.923564
856			11	88	0.923564
859		10		90	0.90298
1991	12		87		0.992554
2004		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain