SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3774

Length: 1316 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3774

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SOUL heme-binding protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	soul heme-binding protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	73%
Blast2go	plastoglobule	GO:0010287	Cellular Component	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZX2

Fln msg:

Fln protein: MAVPDLETVPFKVLRREKDYEIREVQSYYVAETTMPGNTGFDFYGSSEGFNVLAAYLFGKNKKREEMEMTTPVFVQKTQTDGEKMDMTTPVFTKQEGDQGKWTMSFVMPSKYGEDLPLPNDSSVRIKRIQEKIVAVVAFPGFVTDNEVSARESKLRAAVSKDPQVHVKEGASVEIAQYNPPFTPPFMRRNELSLEVERNNDDTR*

Protein Length: 206

Fln nts: CGTCGTGATTTTTGTTTTGTCTTTATATCCCACTCTTGCCATGAATACCCACACATTCCACACCAAAAATCTGAAAAATCAGACAAGGATTCCACCAATCCACAAATATGCCCTGCGCTAAGGTTTTTACAATCTCAATCCTGGGTGGTTGTTCAGGACATGGCTTGGGATTTGGGCTTCGTACCTTATCCAATACACACAAAACACCAAAATTGAAACCGGTGATGGGACGAAAAGGATTCATATCCACCGTGACCATGGCCAGTAACACCCGCGACAGGGAGGGACAGGTTGGCTTCTGCAGATCATTTAACGCTACTCCCTTGTTGTTTGGCTTAGCTTCTCAGGGCTGTTTCCCAGTCCCAAACGCATTGCACAAAATTTGGTTTCTGAGACACTGAAATATTATCAATCCTCGGATATTCGAAGCTCGCAGTTTGGAAGAGGCTTTG_-_ATGGCTGTTCCAGATCTTGAAACTGTACCTTTCAAAGTGTTGAGAAGGGAGAAAGATTATGAAATCAGAGAAGTCCAGTCTTACTATGTAGCAGAGACAACAATGCCTGGAAACACAGGATTTGACTTCTATGGATCATCTGAGGGTTTCAATGTTTTGGCAGCATACCTCTTTGGTAAGAACAAAAAACGTGAAGAAATGGAGATGACTACGCCTGTTTTTGTCCAGAAAACCCAAACTGATGGGGAGAAGATGGACATGACAACACCAGTATTCACAAAGCAGGAAGGAGATCAAGGAAAGTGGACGATGTCCTTTGTTATGCCTTCCAAGTATGGGGAAGACTTGCCCCTCCCAAATGATTCTTCTGTCAGGATAAAGCGGATACAGGAAAAAATTGTTGCAGTAGTTGCTTTTCCAGGGTTTGTGACTGATAATGAAGTGAGCGCTAGAGAATCCAAATTACGTGCTGCTGTGAGTAAGGATCCTCAAGTGCATGTTAAAGAAGGTGCATCAGTAGAAATTGCACAGTATAACCCTCCATTCACTCCTCCATTTATGCGCCGAAATGAGTTATCTTTGGAAGTAGAGCGGAACAATGATGACACTCGCTGA___AAGAGATACATAGTGGGAACTCCTGTTTGTTTCATGCATCTCATTTTGCATTATATTTATCTTATAATTCATGCAACTTCATGGATCTACAAGGATAATGATTTTTCACGGTATACCCTGTTAAATGAGTGGAAATGTGTCATTCCTTGCTAATTTATTCGATCAAATATCACAATTGGGTGTTTATAACTTTATAGTAGAGTGTGACCGCGATTATACTGACGTGTAAGTAGGAAAATGACACCAGAA

Fln Alignment:

sp_v1.1_unigene3774___LETVPFKVLRREKDYEIREVQSYYVAETTMPGNTGFDFYGSSEGFNVLAAYLFGKNK----------KREEMEMTTPVFVQKTQTDGEKMDMTTPVFTKQE--GDQGKW--TMSFVMPSKYG-EDLPLPNDSSVRIKRIQEKIVAVVAFPGFVTDNEVSARESKLRAAVSKDPQVHVKEGASVEIAQYNPPFTPPFMRRNELSLEVE
A9NZX2______________VETAKYEVIFKGSDYEIREYQPSVVAEVTYDP-TQMKKGGKDGGFMILANYIGAVGNPCNIKPESQIEGEKIAMTAPVFTHESSPQSQPIVMTAPVMTAEQTTDDESKKLVTMQFVLPSDYTMENVPRPIDPSVSVKEVPARKYGVVTFSGVADEALVQTMVQKLRKSL-EDGGYQVT--GDYVLGRYNPPWTLPFLRTNEVMLPVE

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
271		80		20	0.995493
272	80		20		0.995493
273		40	20		1.0
274		80	20		0.995493
275		80	20		0.995493
311	60			40	1.0
336		60	40		1.0
337		40		60	1.0
355		60		40	1.0
405	80			20	0.995493
407	80	20			0.995493
408			20	40	1.0
409		20		80	0.995493
413		80	20		0.995493
415	80		20		0.995493
417		80	20		0.995493
418	20	80			0.995493
419		20		80	0.995493
420	20	80			0.995493
423	80	20			0.995493
424		20		80	0.995493
651		33	66		1.0
755	87			12	0.992554
756	87		12		0.992554
757	87		12		0.992554
1048		86		13	0.999973
1159		10		90	0.90298
1160	90		10		0.90298
1182	14		85		0.993533
1187	85		14		0.993533
1190		85		14	0.993533
1216	14			85	0.993533
1279	50	25			0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain