SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3773

Length: 1923 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3773

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T7R3_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	receptor protein	-	-	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF2

Fln msg: your sequence is shorter than subject: 430 - 754

Fln protein: RRDLGCHSPSPVFSPKPSSHLHSTTPSTSSSHKHSSVPPVSVPSVFSHSDARTSNPSNNSSAWKYYISVPLVAVFLITSVLICICRRRNVVTIRPWKTGISGQLQKVFVTGVPKLNRVDLEAACEEFSNVIGSTPDSMLYKGTLSSGIEIAVTATTISSAKDWSEHSELYFRKKIEVLGRINHKNFLNLLGFCEEEEPFRRMMVFEYAPNGTLFEHLHNKGAEHLDWATRMRIIMGIAYCLQYMHHEIEPPVIHPNLNSNAVYLTDDYAAKLSDPDVWKEAVIKSNQMKSSSRTGSFINYGDMGLSDMELEVANNVYCFGLLLLEIISGKLPCAQEQGLLIEWAMGYLDKKDMIQYMVDPSLKSFKYNELEKICEVVQSCIRPYPDQRLSMKDITSEFRVALSISPEAAYPKLSPLWWAELEILSQDGS*

Protein Length: 431

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTCCCCTGTTTTTTCTCCTAAACCCTCATCACATTTACATTCTACTACACCTTCCACTAGTTCTTCTCATAAACATTCATCGGTACCTCCTGTCTCTGTACCCTCTGTTTTCTCACATTCTGATGCACGTACATCTAATCCGTCAAATAATTCAAGTGCATGGAAGTACTATATTTCAGTTCCATTAGTGGCAGTTTTTCTCATAACTTCAGTCCTAATCTGTATTTGTCGTAGACGTAATGTGGTGACAATCAGGCCATGGAAAACTGGAATAAGTGGCCAACTACAGAAGGTGTTTGTAACAGGTGTTCCAAAACTAAATCGAGTAGATTTAGAAGCGGCATGTGAGGAGTTTAGTAATGTCATTGGTTCCACGCCTGATAGCATGTTATACAAAGGAACACTGTCAAGTGGCATTGAAATTGCTGTAACGGCCACCACAATATCGTCTGCAAAAGATTGGTCGGAGCATTCAGAACTTTATTTCAGGAAGAAGATTGAAGTCCTTGGTCGGATTAACCACAAAAACTTTCTTAATCTTCTTGGCTTCTGTGAGGAGGAGGAGCCATTCCGAAGAATGATGGTTTTTGAATATGCTCCAAATGGGACACTATTTGAACATCTTCACAATAAAGGAGCTGAACATCTGGACTGGGCGACTCGGATGAGAATTATAATGGGAATAGCATACTGTCTTCAATATATGCACCATGAAATTGAGCCCCCAGTTATTCATCCTAATTTAAATTCTAATGCAGTCTATTTGACAGATGATTATGCAGCAAAGCTTTCAGACCCAGATGTGTGGAAAGAAGCTGTCATCAAAAGCAATCAAATGAAGTCATCCAGTAGAACTGGGAGTTTTATTAACTATGGTGACATGGGACTTTCTGATATGGAATTGGAAGTTGCAAACAATGTTTATTGCTTTGGACTACTCTTGCTTGAAATCATTTCAGGAAAGCTCCCCTGTGCCCAAGAGCAAGGCTTGCTCATTGAATGGGCTATGGGATACCTTGACAAGAAGGACATGATACAATATATGGTGGACCCTTCCTTGAAATCTTTCAAGTACAATGAATTAGAAAAAATATGTGAGGTTGTACAGTCATGCATTCGTCCATATCCTGACCAGAGGCTGTCAATGAAAGATATTACTTCAGAATTCAGAGTGGCTCTATCAATATCACCAGAAGCCGCATATCCAAAATTATCACCGTTATGGTGGGCAGAACTTGAAATCCTCTCACAAGATGGCAGCTAA___TAAAATTTGTAGATCAATACTGCTATGGTTGCATCACTCAGATGTATGTAGAATGGCTGATAGCTGTAAAAGTTGATTTTTGGTGTTTTCTCCCTATTCAATTGCTTAGGAGTCAGGACTTGCTTTTTTTGTTTTTTAAATTTGGAAGTGGCGAGGAGTTATCCTGTATCTGAATTATCAGGCTGTATAGTAATATCTCGCCCATTTACATGCTAATTGCTTGAGTTGCTTCAAATTCAGAATTTGAAAAGGTGTGCTGAGGGCTTTCTTTGCTTTAAGATCTCATGTTGATTTGTAATCATATTCTTTTTGCAATCATCTCCATTACTGTGATTGAGATATTGCCCCTATGGAGTTGGGAGCCATTAATACATATTTTTGCTTGTATATCTGATGGCTAAAATGCTGTCTCTGGTTTGTCCATCAAAGTTTATATTGCATTAGAAGGTTAACTTATATTAAGGCACATGGCAGAGGAAGGTAGCAGAAGGGACACTTGCCAAAACCTTCAAGTGGCTACTCTGGTAGTTCCTAAAAGTTGAACATTGATTTTGAGGATATCTGCCTGTTAAGTTACATGTTGAACTTGAGAAATATATTATAGACATGCCTCACCTGAGCGAAGTATGTTCT

Fln Alignment:

sp_v1.1_unigene3773___ARTSNPSNNSSAWKYYISVPLVAVFLITSVLICICRRRNVVTIRPWKTGISGQLQKVFVTGVPKLNRVDLEAACEEFSNVIGSTPDSMLYKGTLSSGIEIAVTATTISSAKDWSEHSELYFRKKIEVLGRINHKNFLNLLGFCEEEEPFRRMMVFEYAPNGTLFEHLHNKGAEHLDWATRMRIIMGIAYCLQYMHHEIEPPVIHPNLNSNAVYLTDDYAAKLSDPDVWKEAVIKSNQMKSSSRTGSFINYGDMGLSDMELEVANNVYCFGLLLLEIISGKLPCAQEQGLLIEWAMGYLDKKDMIQYMVDPSLKSFKYNELEKICEVVQSCIRPYPDQRLSMKDITSEFRVALSISPEAAYPKLSPLWWAELEILSQDGS
B8LMF2______________APSDTHTNKPTALRYYIAVPLVAFFLITSVLVCICRRRNVVTIRPWKTGISGQLQKAFVTGVPKLNRVDLEAACEEFSNVIGSTPDSMLYKGTLSSGVEIAVTSTIISSAKDWSEHSELYFRKKIEVLCRINHKNFLNLLGFCEEEEPFRRMMVFEYAPNGTLFEHLHNKGAEHLDWTTRMRIIMGIAYCLQYMHHEMEPRVIHPNLHSNAVYLTDDYAAKLSDSNVWKEAAIKSNKMKSFSASGNLISYDHMELSDKEMEVQNNVYCFGLLLLEIISGKLPYAQEQGLLIEWAMGYLDKKDMIQYMVDPSLKSFKYNELEKICEVVQSCILPYRQKRLSMRDITSELRQALSISPDAAYPKLSPLWWAELEILSQDGS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
602			75	25	0.996473
666	83		16		0.994512
716		10	90		0.90298
1154		31		68	1.0
1155	68		31		1.0
1158		68	31		1.0
1165			68	31	1.0
1166	68			31	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
580	591	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain