SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3753

Length: 1864 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3753 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	64%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	77%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HGI3

Fln msg: your sequence is shorter than subject: 355 - 714

Fln protein: MGDELEPAISKEMERMKLEVGSVIWLEDSQCQRGFQIHEVFRDGQHFLYSATSLEEAGTLLAVYVGAHPSQLQPSWEDMSMWYQVQRQTKVLNVMKQRAISSKYLPQLVDYGRVVHPGLCYKQSPGGRCNHPWCGTPVLVTSPVGEPVSTIITRDGVFTSEEALQCCHDILSALQSAASASIQHGDICPEHVMRVSDSQRHTYYVLVDWGHAVLEDRDSPSINLQFSSTYALQEGKLCPASDAESLVYLLYHLCGGTHQQLESIEAALRWRERSWAKRRIQQQLGEVSALLKAFADYVDSLCSTPYPVDYEIWLKRLSRALPGNGHGKMIDYSAASVRSDDVAESSGTSAASLA*

Protein Length: 356

Fln nts: ATGGGGGATGAATTAGAGCCTGCTATTAGTAAAGAAATGGAGCGAATGAAGCTTGAGGTAGGTTCTGTGATATGGTTGGAAGATTCACAATGTCAAAGGGGTTTTCAGATACATGAAGTTTTCAGAGATGGACAGCATTTCTTGTACAGTGCAACTTCTTTGGAAGAGGCAGGTACACTTTTGGCTGTTTATGTGGGTGCTCATCCCTCCCAACTTCAGCCTTCATGGGAGGATATGAGTATGTGGTACCAGGTACAAAGGCAAACTAAGGTTTTAAATGTCATGAAACAAAGGGCCATATCTAGCAAGTATCTGCCACAGCTTGTTGATTATGGAAGGGTCGTGCACCCTGGTCTTTGCTACAAACAGAGTCCTGGTGGCCGCTGTAACCATCCATGGTGTGGAACACCAGTATTGGTAACTTCTCCTGTTGGAGAGCCCGTTTCTACCATTATTACAAGAGACGGTGTCTTTACTTCAGAGGAAGCTCTACAGTGCTGTCATGATATCTTGTCTGCTTTGCAAAGTGCAGCATCTGCTTCTATCCAGCATGGGGATATCTGTCCTGAACATGTAATGCGTGTTTCAGATTCACAGAGGCATACATATTATGTCCTTGTTGATTGGGGTCATGCTGTACTGGAAGATAGGGATAGTCCTTCTATTAATCTTCAGTTTTCTTCAACTTACGCATTGCAAGAAGGAAAACTCTGTCCAGCATCTGATGCAGAGAGCCTTGTTTACCTCCTCTATCATTTATGTGGTGGAACTCATCAGCAACTAGAATCAATAGAAGCTGCCTTGCGTTGGAGAGAGAGATCTTGGGCAAAACGGCGCATACAACAGCAGCTTGGAGAAGTCTCTGCTCTTTTGAAAGCTTTTGCCGACTATGTTGACAGCCTATGCAGTACTCCATATCCCGTAGATTATGAAATTTGGTTAAAAAGGTTAAGCAGAGCACTGCCTGGCAATGGTCATGGAAAGATGATTGACTATAGTGCTGCTTCAGTGAGGAGTGATGATGTGGCGGAATCATCAGGGACCTCTGCAGCATCTTTGGCCTGA___AGCAATACATAATTTTAATTTATTATTGATTAGCTGTAACTGTGTTGGATCCTACAGCTTGACTTTAAAGTCAAGTTTGTGGCATATATCATGCATTTGGAAATATTTGCTCCATGTATCTGAACTTGGTTTTGTTCTTGTAGGAATTGCATGTTTTCAGGCCATTTTCCCATTTTTTATTTAAAACAGTTTGATACCAAGTCTTGATCAGGAGGCAGGCTATCACCACTGAAAGAAATTTGGAGTTATTGTGAACATTTATCTGTGCTAGTGGTGGACTAAGAAAGCAATAGGGAGGTGTAGAACTGTTGGCTGCATCTTGTTCATTGTTGGTGATTTTGGTATAGATGCAATTGATGATTTAATTTCGCTCCAGATTATGGATTTCTTATACGTGTTTGTACCGGGTTCCTCAAAACACTAGGTGCATTGTAGTGTCTCAGATCTCTTCCCTCCAACCATATTCTTGCTGAATGGGAAAAGTGGCATATATAATAAGGGAACTGTACTAAAGATCATTTCATTTTAGCCAATCTGTATGCTCCACCTGGCACCGGGCCTTAATCATATATTTTCACACTGCTTTCGGATATGCTGTAACTCTTTGTGGCACACAGTTCGGCTGACTGCAATTGGTTTTCTGTGGGAACCCTGGTGTAAAGTTACTTTTAATGAGGACTGCTTTAAGCAGAGTCACCTGCGCTTGTGAAAGTCAAAGTCAGCACCCTCCATCGAGATGTTGAGTCCCTCTTGATGTGCAGGCTCATATGCTTGCTATTTTGGCCTTTTTAGGGGTGTA

Fln Alignment:

sp_v1.1_unigene3753___MGDELEPAISKEMERMKLEVGSVIWLEDS-QCQRGFQIHEVFRDGQHFLYSATSLEEAGTLLAVYVGAHPSQLQPSWEDMSMWYQVQRQTKVLNVMKQRAISSKYLPQLVDYGRVVHPGLCYKQSPGGRCNHPWCGTPVLVTSPVGEPVSTIITRDGVFTSEEALQCCHDXXXXXXXXXXXXXQHGDICPEHVMRVSDSQ---RHTYYVLVDWGHAVLEDRDSPSINLQFSSTYALQEGKLCPASDAESLVYLLYHLCGGTHQQLESIEAALRWRERSWAKRRIQQQLGEVSALLKAFADYVDSLCSTPYPVDYEIWLKRLSRALPGNG-HGKMIDYSAASVRSDDV
F6HGI3______________LDDNESPSFRKQASRLKLKQGEILLLDDQRQGQKSFQIQESLVGGNCLSYSAVSLEYPTELLTLYVGAHPSRLEPSWEDMSLWYQVQRQTKVLNILKQQGISSKYLPEIIASGRILHSGPCKKQSPGGRCDHPWCGTPILVTTPIGEPLSSIVARDGPFSSEDAIRCCRDCLAALRSAKMASIQHGDICPENIIRVLDTQGARSSFFYVPVSWGRAVLEDRDSPAMNLQFSSSHALQHGKLCPASDAESLVYLLYFVCGGTMQQQDSIESALQWRQRCWTKRSIQQQLGEVSALLKAFADYVDSLCGTPYPVDYDIWLKRLNRAVDGSGDRGKQIEEFPANVRVEDV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
410		80		20	0.995493
415	80		20		0.995493
416	80			20	0.995493
419	80	20			0.995493
421			20	80	0.995493
425	20			80	0.995493
426	80		20		0.995493
427	80		20		0.995493
430	20			80	0.995493
431		20	80		0.995493
434			66	16	0.988813
435		83		16	0.994512
1463		66		33	0.997452
1483	33		66		1.0
1524	85		14		0.993533
1609	16	83			0.994512
1658	66		33		1.0
1676	83		16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain