SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3748

Length: 1960 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3748
CGTCGTGACCTTGGCTGTCACTCAATTTTTTGAACGTATACACACCATGGATGATAGCATAGCTCTGAAGACTGTCTTGACTGTATATACAACATCAAGCTCTTTGGACCGACATAGACGACGTGCCGCAATTTACGAGACTTCCAGAATACCACCTTGTAAGTTGCAGGCGGTCGCCATCTCACATTGCATGCCGCTTTCACGGGTTGAATAACAAAGCCCTGGACATATATATAATATATATAGATACGACCACATACTGGACTATTTTCAACCTCGATACACACTTCCTTCAACTCTGACAAACAGCAACCATAGACACTTTAATCCATTTGCATAAAGACCCTCCCACCTCAAAAGCAATTATAGCAGGCCTTGCCTCTGTAAAATATAATCTGAATGCTGTATAAGTAAAAGCACCCCATTTTCTCTGAGCTCTTCAAGTGTTGATGCATCGCCACAGCTAATCTGCCGATCAAGTTCTGTTTTCCAGGGTTTGAATTTGTAGCGTTCGTTAGATTCAACGAAAGAAGATGCAATCTCTTGCCACATGCGGTGCCCGTTTTACTCAGCCGAATTCCCTTGCCAATGGCCTGGATAAACTTGGAGCGAATAAGAACGGTCTAAACAGCAGGATTTTCGTTAATTTGGCCAAAGATTCGAGATGTCTGCCGTTATGTGTGGCTGAGCGTAGAGGGCTGTCTTCAAGAATCAAGGTTTTTGCTCAGGACAAAACAAGCTCAGAAGATGGACGTGAAATTGGCATACAAGGTGATTCAGTGAGTCTACATATAGATCAAGGTCCTGCAGTTACAGTAAAATTTGTCCTTAAACAAAAATGCAAATTTGGCCAGCAATTTCATGTTGTTGGGGATGCCCCACAGTTTGGATCATGGAACCCAAAGACAGCTGTTCCTCTTCAGTGGTCTGAAGGAGACATATGGACGACAGAAGTGGATGTTCCTGTTGGAAAACAGATTGAGTACAAGTTCATACTAGTTGGTAAACTTGGAGAAGTTTTATGGCAACCTGGTCCAAACCGAGCATTTGAGACATCAGGATCTGTGGCATCAGTGGAAGTTTCTTCAGAATGGGAATTGGATGAGAAGATAGCATCTGAGGTTGGCAATGAGAAGGAAGTTTGTGAGGCTACAGAAACTGAGGAAACAGGGCAAGGGATTGGAAATGATAATTCGGCTGCAGCATTGGTAGAAGGAATTTTTTCAAATGTTGTTTCTGGTGTAGATGCAGGACAAGGAATTTTTTCAAATGTTGTTTCTGGTGTAGATGCAGGACAAACAGTCAACATGAGTTCTGATCCACCGAATGGGGTCTTGGGTTCTTCTCCCAAGGAAACAGAAGACAATACCCAAAGGCAGGGCTCTGCCATAGACTTCTCTGGGCCACCAGAAGCACCAGGTTTTAGAACTGAAAGAAATGAAGAGTGAGAAGCAGCTCCAACTACTGAAGCGTTATAATATGTGTAAAATTTATGGGCAAATCTTTATCCAAACTTCAAAGAATAGCATAGTATGATCACAAATGACCCATGGGACAGCTTTTTGGCATTTAGAACTTTATAGTTCTTTATTTTATTGGTTTGTAAGCCATTTCAGCATTTTTGCACATACAAGATATGCATACATACTGTGTAGAAAGTTGTGCTAAAGAGGCAGCATATGAATCTTTGGTCAAGACTCAAAATTATCTGAGAGTGAAATATAGATTGAGTGTTATGTATTGGATGAAAATGTAATCAAAATTATCTGAGACTGAAATCTAGAATTGAAGTGTTATTTGTTGGGTGAACCTGTAATATTCAATTTCTCTTGTACAGTAATATGCCATTACCTGCTACCTATAATGGCACTTGAACAAATGGATGGATGACTGTTTTTCCATACCTGTAAACAAGTTAGTGAGGAAAGCTGTGCTAAAAGAAGGAAGCTTAGGGAGCTTT

Ace file of the UniGene sp_v1.1_unigene3748

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycoside hydrolase starch-binding domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M743_ARALY	-	-	3.0e-23	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	Carbohydrate binding module family 20	IPR002044	-	65%
Blast2go	Immunoglobulin-like fold	IPR013783	-	65%
Blast2go	Carbohydrate-binding-like fold	IPR013784	-	65%
Blast2go	Alpha amylase	IPR015902	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX57

Fln msg:

Fln protein: MQSLATCGARFTQPNSLANGLDKLGANKNGLNSRIFVNLAKDSRCLPLCVAERRGLSSRIKVFAQDKTSSEDGREIGIQGDSVSLHIDQGPAVTVKFVLKQKCKFGQQFHVVGDAPQFGSWNPKTAVPLQWSEGDIWTTEVDVPVGKQIEYKFILVGKLGEVLWQPGPNRAFETSGSVASVEVSSEWELDEKIASEVGNEKEVCEATETEETGQGIGNDNSAAALVEGIFSNVVSGVDAGQGIFSNVVSGVDAGQTVNMSSDPPNGVLGSSPKETEDNTQRQGSAIDFSGPPEAPGFRTERNEE*

Protein Length: 306

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGAACGTATACACACCATGGATGATAGCATAGCTCTGAAGACTGTCTTGACTGTATATACAACATCAAGCTCTTTGGACCGACATAGACGACGTGCCGCAATTTACGAGACTTCCAGAATACCACCTTGTAAGTTGCAGGCGGTCGCCATCTCACATTGCATGCCGCTTTCACGGGTTGAATAACAAAGCCCTGGACATATATATAATATATATAGATACGACCACATACTGGACTATTTTCAACCTCGATACACACTTCCTTCAACTCTGACAAACAGCAACCATAGACACTTTAATCCATTTGCATAAAGACCCTCCCACCTCAAAAGCAATTATAGCAGGCCTTGCCTCTGTAAAATATAATCTGAATGCTGTATAAGTAAAAGCACCCCATTTTCTCTGAGCTCTTCAAGTGTTGATGCATCGCCACAGCTAATCTGCCGATCAAGTTCTGTTTTCCAGGGTTTGAATTTGTAGCGTTCGTTAGATTCAACGAAAGAAG_-_ATGCAATCTCTTGCCACATGCGGTGCCCGTTTTACTCAGCCGAATTCCCTTGCCAATGGCCTGGATAAACTTGGAGCGAATAAGAACGGTCTAAACAGCAGGATTTTCGTTAATTTGGCCAAAGATTCGAGATGTCTGCCGTTATGTGTGGCTGAGCGTAGAGGGCTGTCTTCAAGAATCAAGGTTTTTGCTCAGGACAAAACAAGCTCAGAAGATGGACGTGAAATTGGCATACAAGGTGATTCAGTGAGTCTACATATAGATCAAGGTCCTGCAGTTACAGTAAAATTTGTCCTTAAACAAAAATGCAAATTTGGCCAGCAATTTCATGTTGTTGGGGATGCCCCACAGTTTGGATCATGGAACCCAAAGACAGCTGTTCCTCTTCAGTGGTCTGAAGGAGACATATGGACGACAGAAGTGGATGTTCCTGTTGGAAAACAGATTGAGTACAAGTTCATACTAGTTGGTAAACTTGGAGAAGTTTTATGGCAACCTGGTCCAAACCGAGCATTTGAGACATCAGGATCTGTGGCATCAGTGGAAGTTTCTTCAGAATGGGAATTGGATGAGAAGATAGCATCTGAGGTTGGCAATGAGAAGGAAGTTTGTGAGGCTACAGAAACTGAGGAAACAGGGCAAGGGATTGGAAATGATAATTCGGCTGCAGCATTGGTAGAAGGAATTTTTTCAAATGTTGTTTCTGGTGTAGATGCAGGACAAGGAATTTTTTCAAATGTTGTTTCTGGTGTAGATGCAGGACAAACAGTCAACATGAGTTCTGATCCACCGAATGGGGTCTTGGGTTCTTCTCCCAAGGAAACAGAAGACAATACCCAAAGGCAGGGCTCTGCCATAGACTTCTCTGGGCCACCAGAAGCACCAGGTTTTAGAACTGAAAGAAATGAAGAGTGA___GAAGCAGCTCCAACTACTGAAGCGTTATAATATGTGTAAAATTTATGGGCAAATCTTTATCCAAACTTCAAAGAATAGCATAGTATGATCACAAATGACCCATGGGACAGCTTTTTGGCATTTAGAACTTTATAGTTCTTTATTTTATTGGTTTGTAAGCCATTTCAGCATTTTTGCACATACAAGATATGCATACATACTGTGTAGAAAGTTGTGCTAAAGAGGCAGCATATGAATCTTTGGTCAAGACTCAAAATTATCTGAGAGTGAAATATAGATTGAGTGTTATGTATTGGATGAAAATGTAATCAAAATTATCTGAGACTGAAATCTAGAATTGAAGTGTTATTTGTTGGGTGAACCTGTAATATTCAATTTCTCTTGTACAGTAATATGCCATTACCTGCTACCTATAATGGCACTTGAACAAATGGATGGATGACTGTTTTTCCATACCTGTAAACAAGTTAGTGAGGAAAGCTGTGCTAAAAGAAGGAAGCTTAGGGAGCTTT

Fln Alignment:

sp_v1.1_unigene3748___MQSLATCGARFTQPNSLANGLDKLGANKNGLNSRIFVNLAKDSRCLPLCVAERRGLSSRIKVFAQDKT-----------------SSEDGREIGIQGDSVSLHIDQGPAVTVKFVLKQKCKFGQQFHVVGDAPQFGSWNPKTAVPLQWSEGDIWTTEVDVPVGKQIEYKFILVGKLGEVLWQPGPNRAFXXXXXXXXXXXXXXWELDEKIASEVGNXXXXXXXXXXXXXGQGIGNDNSAAALVEGIFSNVVSGVDAGQGIFSNVVSGVDAGQTVNMSSDPPNGVLGSSPKETEDNTQRQGSAIDFSGPPEAPGFR
A9NX57______________MQSLATCGVRFTQPNSLGDGLDKFGANKNGINGRTFVNLSKDLRCLPFCVAERRGPSSRIKVFAQDKTGSEDGHEIGIQDDSDKTSSEDGREIGIQDDSVSLHKDQGPTVTVKFVLEKKCKFGQQFHVVGDAPQFGSWNPKAAVPLEWSEGDMWTKEVDVPVGKQIEYKFILIGKRGELLWQPGPNRAFEASGHVASVVVSSEWELDEEILSEAGNEKEVCEATEMEITGQGIGNENSAATLVEGIF--------------SDVISGLDAVQTGNVISGPPNGALGSSAKQTEDNTQRKGSVIDLSGPPDAPGLR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
40	85	14			0.993533
41		85		14	0.993533
46		85		14	0.993533
51	87		12		0.992554
259	66		33		0.997452
260		66	33		0.997452
261			33	66	0.997452
280	75		25		0.996473
282	75		25		0.996473
283		75	25		0.996473
284	66		33		0.997452
285		66	33		0.997452
341	66		33		0.997452
1400	8			91	1.0
1402	3		96		0.988113
1598		75	25		0.996473
1837	27		72		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain