SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3737

Length: 2029 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3737
ATTTCACACAGAGAGGCAAATGGGATGTGTCCCTTGCTCGCTCGACCTTTCAATTTGCAAGTGGGTATTTAAGTAGCGAAAGCGAAGGAAATACATAGATTCCCTTTTTTTCAAACGATTAGAGTATTATTGGCTGCGTAATCAGGGTATCTGTGTAAGAGGAAGGATTTCAAAGGGTATATGTAACAAAGGCCTTCTCTCCCTTGAAATCAACTTATTGCAATAGCCTATTTTCCTTGCAGCAGCCGCTGCACTGTAAGTGAAATAAGTTCAATAAAGCCATTAAAAAGCGATTTAGGGAGCATATCAACATGGCTTCAACTGTGAAGGACGTGCAGTCAAAAGAGGAGTTTGACGGGATACTCAAGGAAGGAGGGCAGCCTGTTATATTGCATTTTTGGGCAGAATGGTGCGAGGCATCCAAGCAGATGGATCGAGTTTTCTCCCATCTTTGCACAGATGCCCCTCATGCTAAGTTTCTTAGGGTTGAAGCTGAACAACAACCAGAGATATCGGAGGCATTCTCAGTATCGGCCGTACCATATTTCGTCTTTTTTAAGGATGGGAAGGTTGTAGATACATTGGAAGGTGCAAATCCGTCAGAATTAGCCAACAAAGTGTCCAAGGTTTCTGGTTCCTTAGACCACGTGAGCTCAGCTGCTCCTGCTAGCCTTGGCATGGCTGGTGGTCCTGCAGTGATTGAGGCAGTCAAGGAATTGAATAAGTCTCCACAGGTTGGTAGCATCACTGCTAGATCAGATACTGCGCTGAAGAGCAGACTGCAGCAACTTGTGGACTCCAAACCCATCCTTTTGTTTATGAAAGGCACCCCAGATCAACCACGTTGTGGATTTAGCAGAAAAGTTCTGGACGTTTTGAAAGAGTTGGGTGTGGAGTTTGGCAGCTTTGATATTCTGAGCGATGAAGAAGTGCGTGAGGGAATGAAGGTATTTTCTAACTGGCCAACCTTTCCCCAGCTGTATTGTAAGGGTGAGCTGCTTGGAGGCTGTGATATTACCCTTGAAATGCATGAGAACGGTGAGTTGAAGACACTGTTTGAACAACATGGCCTGCTTCCCAGTGCTGTCAAAACTGCTGTATCGATTGTGGAAAAACCTGCAACTGAATCAAAATCTGATGCCAAATTCTCAGCATCTGATAATGGAGCTATAGTAGCAGATTCAATGGGTATAAGTGAATCCTTAAAATCTCGACTAGAGAGCATCATTAACTCCAGCCCTATTATGTTGTTTATGAAGGGTACTCCTGAAGAGCCACGCTGTGGTTTTAGTAAGAAATCTGTTGAAATTCTTAAAGAGGAAGAGCTAGAATTCAGTAGCTTCAACATTCTGGACGATGAAGAGGTGCGCCAAGGTCTCAAAACATATTCTAATTGGTCCAGCTATCCCCAATTGTACATAAAAGGTGAGTTCATCGGTGGATCAGATATCATGATAGAGATGCAGAAGAGCGGAGAGCTGAAGAGAGTTGTGGCTGAGAAAGGGGCGATGCCCAAAGAATCTCTTGAGAATCGTTTGAAACATTTAGTCAGTTCTTCTACTATTATGCTATTCATGAAAGGGACACCAGATGCCCCTCGTTGTGGCTTCAGTTCAAAGGTTGTGAATGCTTTGAGGGAAGAGGGTCTGAATTTTGGGTCTTTTGACATTTTGAATGATGAGGAAGTGCGGCAAGGGCTGAAGACCTATTCCAATTGGCCGACATTTCCTCAATTGTATCACAAAGGCGAGTTGATTGGTGGATGTGACATTGTGTTGGAAATGCATAAATCGGGAGAACTAAAAGCAACCTTGGCAGACTAGAACCAAAATTATAGAGAGTACATGGAGATTCAATAAAAACAACTTATATGGTTGTTTGGTTTTATCATTTATGTATGGTGGAATCATTTTGTAGTGTTGTAGAATATAGAGACTTCAGCAAAACTTATTTTAGTTCTATTTCTTTTGTATCTGTTATGCTAAGAAAGTTATTTAGATAGAAGAAATGCATAGATAAAATTCATTTT

Ace file of the UniGene sp_v1.1_unigene3737

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutaredoxin, grx, putative n=1 Tax=Ricinus communis RepID=B9RZ84_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	glutaredoxin s17	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Glutaredoxin	IPR002109	-	77%
Blast2go	Monothiol glutaredoxin-related	IPR004480	-	77%
Blast2go	Thioredoxin fold	IPR012335	-	77%
Blast2go	Thioredoxin-like fold	IPR012336	-	77%
Blast2go	Thioredoxin domain	IPR013766	-	77%
Blast2go	Thioredoxin-like	IPR017936	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ9

Fln msg:

Fln protein: MASTVKDVQSKEEFDGILKEGGQPVILHFWAEWCEASKQMDRVFSHLCTDAPHAKFLRVEAEQQPEISEAFSVSAVPYFVFFKDGKVVDTLEGANPSELANKVSKVSGSLDHVSSAAPASLGMAGGPAVIEAVKELNKSPQVGSITARSDTALKSRLQQLVDSKPILLFMKGTPDQPRCGFSRKVLDVLKELGVEFGSFDILSDEEVREGMKVFSNWPTFPQLYCKGELLGGCDITLEMHENGELKTLFEQHGLLPSAVKTAVSIVEKPATESKSDAKFSASDNGAIVADSMGISESLKSRLESIINSSPIMLFMKGTPEEPRCGFSKKSVEILKEEELEFSSFNILDDEEVRQGLKTYSNWSSYPQLYIKGEFIGGSDIMIEMQKSGELKRVVAEKGAMPKESLENRLKHLVSSSTIMLFMKGTPDAPRCGFSSKVVNALREEGLNFGSFDILNDEEVRQGLKTYSNWPTFPQLYHKGELIGGCDIVLEMHKSGELKATLAD*NQNYREYMEIQ*

Protein Length: 517

Fln nts: ATTTCACACAGAGAGGCAAATGGGATGTGTCCCTTGCTCGCTCGACCTTTCAATTTGCAAGTGGGTATTTAAGTAGCGAAAGCGAAGGAAATACATAGATTCCCTTTTTTTCAAACGATTAGAGTATTATTGGCTGCGTAATCAGGGTATCTGTGTAAGAGGAAGGATTTCAAAGGGTATATGTAACAAAGGCCTTCTCTCCCTTGAAATCAACTTATTGCAATAGCCTATTTTCCTTGCAGCAGCCGCTGCACTGTAAGTGAAATAAGTTCAATAAAGCCATTAAAAAGCGATTTAGGGAGCATATCAAC_-_ATGGCTTCAACTGTGAAGGACGTGCAGTCAAAAGAGGAGTTTGACGGGATACTCAAGGAAGGAGGGCAGCCTGTTATATTGCATTTTTGGGCAGAATGGTGCGAGGCATCCAAGCAGATGGATCGAGTTTTCTCCCATCTTTGCACAGATGCCCCTCATGCTAAGTTTCTTAGGGTTGAAGCTGAACAACAACCAGAGATATCGGAGGCATTCTCAGTATCGGCCGTACCATATTTCGTCTTTTTTAAGGATGGGAAGGTTGTAGATACATTGGAAGGTGCAAATCCGTCAGAATTAGCCAACAAAGTGTCCAAGGTTTCTGGTTCCTTAGACCACGTGAGCTCAGCTGCTCCTGCTAGCCTTGGCATGGCTGGTGGTCCTGCAGTGATTGAGGCAGTCAAGGAATTGAATAAGTCTCCACAGGTTGGTAGCATCACTGCTAGATCAGATACTGCGCTGAAGAGCAGACTGCAGCAACTTGTGGACTCCAAACCCATCCTTTTGTTTATGAAAGGCACCCCAGATCAACCACGTTGTGGATTTAGCAGAAAAGTTCTGGACGTTTTGAAAGAGTTGGGTGTGGAGTTTGGCAGCTTTGATATTCTGAGCGATGAAGAAGTGCGTGAGGGAATGAAGGTATTTTCTAACTGGCCAACCTTTCCCCAGCTGTATTGTAAGGGTGAGCTGCTTGGAGGCTGTGATATTACCCTTGAAATGCATGAGAACGGTGAGTTGAAGACACTGTTTGAACAACATGGCCTGCTTCCCAGTGCTGTCAAAACTGCTGTATCGATTGTGGAAAAACCTGCAACTGAATCAAAATCTGATGCCAAATTCTCAGCATCTGATAATGGAGCTATAGTAGCAGATTCAATGGGTATAAGTGAATCCTTAAAATCTCGACTAGAGAGCATCATTAACTCCAGCCCTATTATGTTGTTTATGAAGGGTACTCCTGAAGAGCCACGCTGTGGTTTTAGTAAGAAATCTGTTGAAATTCTTAAAGAGGAAGAGCTAGAATTCAGTAGCTTCAACATTCTGGACGATGAAGAGGTGCGCCAAGGTCTCAAAACATATTCTAATTGGTCCAGCTATCCCCAATTGTACATAAAAGGTGAGTTCATCGGTGGATCAGATATCATGATAGAGATGCAGAAGAGCGGAGAGCTGAAGAGAGTTGTGGCTGAGAAAGGGGCGATGCCCAAAGAATCTCTTGAGAATCGTTTGAAACATTTAGTCAGTTCTTCTACTATTATGCTATTCATGAAAGGGACACCAGATGCCCCTCGTTGTGGCTTCAGTTCAAAGGTTGTGAATGCTTTGAGGGAAGAGGGTCTGAATTTTGGGTCTTTTGACATTTTGAATGATGAGGAAGTGCGGCAAGGGCTGAAGACCTATTCCAATTGGCCGACATTTCCTCAATTGTATCACAAAGGCGAGTTGATTGGTGGATGTGACATTGTGTTGGAAATGCATAAATCGGGAGAACTAAAAGCAACCTTGGCAGACTAGAACCAAAATTATAGAGAGTACATGGAGATTCAATAA___AAACAACTTATATGGTTGTTTGGTTTTATCATTTATGTATGGTGGAATCATTTTGTAGTGTTGTAGAATATAGAGACTTCAGCAAAACTTATTTTAGTTCTATTTCTTTTGTATCTGTTATGCTAAGAAAGTTATTTAGATAGAAGAAATGCATAGATAAAATTCATTTT

Fln Alignment:

sp_v1.1_unigene3737___MASTVKDVQSKEEFDGILKEGGQ-PVILHFWAEWCEASKQMDRVFSHLCTDAPHAKFLRVEAEQQPEISEAFSVSAVPYFVFFKDGKVVDTLEGANPSELANKVSKVSGSLDHVSSAAPASLGMAGGPAVIEAVKELNKSPQVGSITARSDTALKSRLQQLVDSKPILLFMKGTPDQPRCGFSRKVLDVLKELGVEFGSFDILSDEEVREGMKVFSNWPTFPQLYCKGELLGGCDITLEMHENGELKTLFEQHGLLPSAVKTAVSIVEKPATESKSDAKFSASDNGAIVADSMGISESLKSRLESIINSSPIMLFMKGTPEEPRCGFSKKSVEILKEEELEFSSFNILDDEEVRQGLKTYSNWSSYPQLYIKGEFIGGSDIMIEMQKSGELKRVVAEKGAMPKESLENRLKHLVSSSTIMLFMKGTPDAPRCGFSSKVVNALREEGLNFGSFDILNDEEVRQGLKTYSNWPTFPQLYHKGELIGGCDIVLEMHKSGELKATLAD
B8LLJ9______________MGSTVKDVQSKEELDGILKEGGGLPALLHFWAEWCEASKQMDRVFSHLCTDTPHAKFLRVEAEQQPEISEAFSVSAVPYFVFFKDGKVVDTLEGANPSELANKVSKVSGSLNHVSSAAPASLGMASGPAVTEEVKEMNEPPQVGSITARSNTALNSRLQQLVDSKAILLFMKGTPDQPRCGFSRKLVNVLKEVGVEFGSFDILSDEEVREGMKVFSNWPTFPQLYCKGELLGGCDITLEMHESGELKTVFEYHGLLPNADKTGVSIVEKAATESKSDAKFSGSDNGAIAADSTGISESLKSRLESIINSSPILLFMKGTPEEPRCGFSKKSVEILREEELEFSSFNILSDEEVRQGLKTYSNWTSYPQLYIKGELIGGSDIMIEMQKSGELKRVVAEKGVMPKESLENRLKRLVNSSPIILFMKGTPDAPRCGFSSKVVNALREEGLNFGYFDILSDEEVRQGLKTYSNWPTFPQLYHKGELIGGCDIVLEMHKSGELKSTLAE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
811	83		16		0.994512
813	50	50			1.0
852		16		83	0.994512
929	81		18		0.999994
1320	83			16	0.994512
1322	83		16		0.994512
1346	16			83	0.994512
1364	85		14		0.993533
1449	88		11		0.923564
1499	12	87			0.992554
1502	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain