SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3730

Length: 2237 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3730
ATGNNCCATTAAATACAGCGAAGGCAACTTCCTGGAACCTTCCTCTCTGCTGAATATGCTATTGTTTCTGTTGCTTGGATAACAACGTAACAATAATAATGAGTAGCATTTTAGGCATTGTTCATCCTGGAATTCCCCATTCCCACCAAGACCAATTCCGATGACCCGTTCTTTTGTATATATAGATCTCTCATTTCCATGTATGTCTTTGAGTGTATCGGAAAGGCAGGCGCCGTTTCATTATTGGATCCTTTCAACACAGACAACAATCTTCTGGACAAAACGATGACATTTTTCCCGCAACATTCAGTACAAATAACTGATTAATCATTTCTGCAAATATTCATAGTGATTGTAGCCATATTTGGAATGGGATGCATGCTACAGTTTCTTTAAAAATGGATGATATTGCTGGTTCAAGAACTCAGAGAAATGTTGGCCAGACTCAGATAGAATTGGGATTGTCAGATTATGACAGAGACAATGAAGATGAGGATCAGATCCTTATAATCCCTTCAGATGCCGATAGAAAGGACCATGAATTCAAGTCTACAATGAATGGACCATTGGTGGATGTCTTGCACATGTGGACATTGAAAAGAGTGAAAAATCGAATATTTGGAAGCATTCGCATTGTCACAATGCAAAACAAAATAAATCTGTTGCTTCCTTTTGGTCCTGCTGCAGTGATTTTAGCTCATTTTTCGAAGGGAGAACATGGATGGATTTTCTTTTTCAGCTTGTTGGGCATAACACCTTTGGCTGAGCGACTAGGCTTTGTAACAGAGCAGCTAGCATTTTTCACTGGTCCCACAGTTGGAGGCCTTCTGAATGCTACATTTGGAAACGCGACTGAGATGATCGTCTCTTTATATGCTCTTGATAACGGAATGGTTCGCATTGTGCAACAATCTTTACTTGGTTCTATCTTGTCAAACATGTTGCTTGTGCTTGGATGTGCCTTTTTCATGGGTGGTTTTATTCATCATCAGAAAGAACAGGTCTTTAATAAGGCTGCTGCTGTTGTCAACTCAGGATTATTATTGATGGCTGTTATGGGCCTACTTTTCCCAGCTGTACTGCACTATACACACACAGAATTGCATGTTGGAAAATCAGAATTATCCCTTTCAAGGTTTAGCAGCTGTGTCATGCTTGTAGCCTATGTATTCTACCTTGTCTTCCAGCTGAAGAGTCACAGAAATCTTTATGACCCGGTAGATCAGACTCAGGGAGAGAATGGGGGAGTTACAAATGAAGAGGAAGTTGCTGTGATAACCCATTGGGAAGCAATATCATGGCTTGCTATCCTTACTGCTTGGATTTCTTTTCTCTCAGGATATCTTGTAAATGCCATAGAGGGGGCATCTCAGTCTTGGAATATGCCAGTTGCTTTTATAAGTGTGATTCTTCTACCAATTGTTGGGAATGCTGCGGAGCATGCAAGTGCTATAATGTTTGCTATGAAAGATAAGCTGGACATCTCCCTAGGTGTTGCGATTGGGTCTTCAACACAAATAGCGATGTTTGTGATTCCCTTTTGTGTGGTGGTTGGTTGGATTATGGGAAAGTCCATGGATTTGAACTTTCAACTTTTTGAGACTGCTACATTATTTATTACAGTCATCGTGGTCGCATTTATGCTTCAGGAAGGTACATCAAACTATTTCAAAGGGTTAATGCTTATTTTATGCTACATGATAGTTGCTGCAAGCTTCTTTGTACATGTCGATCCTGAACACACTGAACACGATAATACTTAGCGGTGTTCTTGAGAATCACTTGCAGGATTCAGAAGCTGAGGTATCTTATTATATTATGGAAGGGATTTATATCAAATTATCCATGTGTATTGATTATATATGCAAGCATGCATTATCAGCGTTGGCTCAGATTTGGGGAAGAACAGTTAATGTTGCTCAATGTTCTTTTTTTGTCAGGACCAATGAACCTGGGTTTTTAAATTACAGGCTTCAACTTTAGGGATTCCAATTAAGTGCCTTGTAGATTGCTCTCAGAGGTTTGCATAGGATTATAGCTTCTATAATTTGTGTTGTAATGGGATTGGGGCTCTTGGGAATTCAGAAGATCAGCACCCTGAATTCCCTGTGGTGTTAGTTGACAGCAGTTGGATTGGGGAAATGTATATTCTGTTTAAGGAATGAAATAGTGACAATTCCAGCAACATGAGCTTTTTGCCTTATATGGAAATATAGAAAAGTAATGATCTTAGAAAA

Ace file of the UniGene sp_v1.1_unigene3730 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pco137126; LOC100286108; K07300 Ca2+:H+ antiporter	-	-	68%
FL-Next	sp=Vacuolar cation/proton exchanger 2; Oryza sativa subsp. japonica (Rice).	-	-	75%
Blast2go	h+ ca2+ exchanger	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium/proton exchanger	IPR004713	-	84%
Blast2go	Calcium/proton exchanger superfamily	IPR004798	-	84%
Blast2go	Sodium/calcium exchanger membrane region	IPR004837	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5KQN0

Fln msg:

Fln protein: MHATVSLKMDDIAGSRTQRNVGQTQIELGLSDYDRDNEDEDQILIIPSDADRKDHEFKSTMNGPLVDVLHMWTLKRVKNRIFGSIRIVTMQNKINLLLPFGPAAVILAHFSKGEHGWIFFFSLLGITPLAERLGFVTEQLAFFTGPTVGGLLNATFGNATEMIVSLYALDNGMVRIVQQSLLGSILSNMLLVLGCAFFMGGFIHHQKEQVFNKAAAVVNSGLLLMAVMGLLFPAVLHYTHTELHVGKSELSLSRFSSCVMLVAYVFYLVFQLKSHRNLYDPVDQTQGENGGVTNEEEVAVITHWEAISWLAILTAWISFLSGYLVNAIEGASQSWNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQIAMFVIPFCVVVGWIMGKSMDLNFQLFETATLFITVIVVAFMLQEGTSNYFKGLMLILCYMIVAASFFVHVDPEHTEHDNT*

Protein Length: 464

Fln nts: ATGgtCCATTAAATACAGCGAAGGCAACTTCCTGGAACCTTCCTCTCTGCTGAATATGCTATTGTTTCTGTTGCTTGGATAACAACGTAACAATAATAATGAGTAGCATTTTAGGCATTGTTCATCCTGGAATTCCCCATTCCCACCAAGACCAATTCCGATGACCCGTTCTTTTGTATATATAGATCTCTCATTTCCATGTATGTCTTTGAGTGTATCGGAAAGGCAGGCGCCGTTTCATTATTGGATCCTTTCAACACAGACAACAATCTTCTGGACAAAACGATGACATTTTTCCCGCAACATTCAGTACAAATAACTGATTAATCATTTCTGCAAATATTCATAGTGATTGTAGCCATATTTGGAATGGG_-_ATGCATGCTACAGTTTCTTTAAAAATGGATGATATTGCTGGTTCAAGAACTCAGAGAAATGTTGGCCAGACTCAGATAGAATTGGGATTGTCAGATTATGACAGAGACAATGAAGATGAGGATCAGATCCTTATAATCCCTTCAGATGCCGATAGAAAGGACCATGAATTCAAGTCTACAATGAATGGACCATTGGTGGATGTCTTGCACATGTGGACATTGAAAAGAGTGAAAAATCGAATATTTGGAAGCATTCGCATTGTCACAATGCAAAACAAAATAAATCTGTTGCTTCCTTTTGGTCCTGCTGCAGTGATTTTAGCTCATTTTTCGAAGGGAGAACATGGATGGATTTTCTTTTTCAGCTTGTTGGGCATAACACCTTTGGCTGAGCGACTAGGCTTTGTAACAGAGCAGCTAGCATTTTTCACTGGTCCCACAGTTGGAGGCCTTCTGAATGCTACATTTGGAAACGCGACTGAGATGATCGTCTCTTTATATGCTCTTGATAACGGAATGGTTCGCATTGTGCAACAATCTTTACTTGGTTCTATCTTGTCAAACATGTTGCTTGTGCTTGGATGTGCCTTTTTCATGGGTGGTTTTATTCATCATCAGAAAGAACAGGTCTTTAATAAGGCTGCTGCTGTTGTCAACTCAGGATTATTATTGATGGCTGTTATGGGCCTACTTTTCCCAGCTGTACTGCACTATACACACACAGAATTGCATGTTGGAAAATCAGAATTATCCCTTTCAAGGTTTAGCAGCTGTGTCATGCTTGTAGCCTATGTATTCTACCTTGTCTTCCAGCTGAAGAGTCACAGAAATCTTTATGACCCGGTAGATCAGACTCAGGGAGAGAATGGGGGAGTTACAAATGAAGAGGAAGTTGCTGTGATAACCCATTGGGAAGCAATATCATGGCTTGCTATCCTTACTGCTTGGATTTCTTTTCTCTCAGGATATCTTGTAAATGCCATAGAGGGGGCATCTCAGTCTTGGAATATGCCAGTTGCTTTTATAAGTGTGATTCTTCTACCAATTGTTGGGAATGCTGCGGAGCATGCAAGTGCTATAATGTTTGCTATGAAAGATAAGCTGGACATCTCCCTAGGTGTTGCGATTGGGTCTTCAACACAAATAGCGATGTTTGTGATTCCCTTTTGTGTGGTGGTTGGTTGGATTATGGGAAAGTCCATGGATTTGAACTTTCAACTTTTTGAGACTGCTACATTATTTATTACAGTCATCGTGGTCGCATTTATGCTTCAGGAAGGTACATCAAACTATTTCAAAGGGTTAATGCTTATTTTATGCTACATGATAGTTGCTGCAAGCTTCTTTGTACATGTCGATCCTGAACACACTGAACACGATAATACTTAG___CGGTGTTCTTGAGAATCACTTGCAGGATTCAGAAGCTGAGGTATCTTATTATATTATGGAAGGGATTTATATCAAATTATCCATGTGTATTGATTATATATGCAAGCATGCATTATCAGCGTTGGCTCAGATTTGGGGAAGAACAGTTAATGTTGCTCAATGTTCTTTTTTTGTCAGGACCAATGAACCTGGGTTTTTAAATTACAGGCTTCAACTTTAGGGATTCCAATTAAGTGCCTTGTAGATTGCTCTCAGAGGTTTGCATAGGATTATAGCTTCTATAATTTGTGTTGTAATGGGATTGGGGCTCTTGGGAATTCAGAAGATCAGCACCCTGAATTCCCTGTGGTGTTAGTTGACAGCAGTTGGATTGGGGAAATGTATATTCTGTTTAAGGAATGAAATAGTGACAATTCCAGCAACATGAGCTTTTTGCCTTATATGGAAATATAGAAAAGTAATGATCTTAGAAAA

Fln Alignment:

sp_v1.1_unigene3730___RIFGSIRIVTMQNKINLLLPFGPAAVILAHFSKGEHGWIFFFSLLGITPLAERLGFVTEQLAFFTGPTVGGLLNATFGNATEMIVSLYALDNGMVRIVQQSLLGSILSNMLLVLGCAFFMGGFIHHQKEQVFNKAAAVVNSGLLLMAVMGLLFPAVLHYTHTELHVGKSELSLSRFSSCVMLVAYVFYLVFQLKSHRNLYDPVDQTQXXXXXXXXXXXVAVITHWEAISWLAILTAWISFLSGYLVNAIEGASQSWNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQIAMFVIPFCVVVGWIMGKSMDLNFQLFETATLFITVIVVAFMLQEGTSNYFKGLMLILCYMIVAASFFVHVDPEHTEH
Q5KQN0______________RALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFTHSEVQYGKSEVSLSRFSSCIMLVAYASYLFFQLKSQRSLYSPIGEQEEEVTEDEEEEKE--ITQGEAICWLFVLTIWISILSGYLVDAIQGASESLNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNN

SNPs (tot: 115)

Position	A %	C %	G %	T %	Probability
310	88		11		0.923564
417		90	10		0.90298
418	10	90			0.90298
419	90		10		0.90298
421	90		10		0.90298
423		10		90	0.90298
426	90		10		0.90298
427	90	10			0.90298
428		10		90	0.90298
438		84	15		0.999986
526		11		88	0.923564
572	88			11	0.923564
573			11	88	0.923564
577			11	88	0.923564
578	11			88	0.923564
579		11	88		0.923564
581			12	87	0.992554
582		12	87		0.992554
583		12		87	0.992554
585	12	87			0.992554
586		87	12		0.992554
587			12	87	0.992554
591	12			87	0.992554
592			87	12	0.992554
594	75	12	12		0.975346
600	83	16			0.994512
602	16			83	0.994512
604	20	80			0.995493
605			80	20	0.995493
607		80		20	0.995493
609	80	20			0.995493
610		80		20	0.995493
616		80	20		0.995493
702			80	20	0.995493
705	83		16		0.994512
707		83	16		0.994512
711	83		16		0.994512
712	83	16			0.994512
715	16			83	0.994512
716		83	16		0.994512
719	16			83	0.994512
720	83	16			0.994512
721			16	83	0.994512
722	16			83	0.994512
723		16		83	0.994512
818	80	20			0.995493
1092		85		14	0.993533
1172	87			12	0.992554
1543		80		20	0.999996
1544			20	80	0.999996
1546	80	20			0.999996
1548	80		20		0.999996
1549		20		80	0.999996
1552	20	80			0.999996
1553			20	80	0.999996
1557		20	80		0.999996
1558		80	20		0.999996
1560		20	80		0.999996
1582		11		88	0.923564
1583		11		88	0.923564
1633	14			85	0.993533
1634		87	12		0.992554
2009		83		16	0.999991
2021	25			75	1.0
2081	10		90		0.90298
2086			90	10	0.90298
2089	10	90			0.90298
2090			10	90	0.90298
2093	10		90		0.90298
2094		10		90	0.90298
2095	10		90		0.90298
2097		10	90		0.90298
2098	90	10			0.90298
2100	10			90	0.90298
2102		10	90		0.90298
2104		20	80		0.999996
2105	90	10			0.90298
2106	90	10			0.90298
2107			10	90	0.90298
2108	11			88	0.923564
2110		88	11		0.923564
2117	87	12			0.992554
2118	87	12			0.992554
2136		88	11		0.923564
2138		88	11		0.923564
2139	88	11			0.923564
2140		22		77	0.999999
2141	11	11		77	0.968132
2142	88		11		0.923564
2143		11		88	0.923564
2144		12		87	0.992554
2146	12			87	0.992554
2147			12	87	0.992554
2150		12		87	0.992554
2151	87	12			0.992554
2153		12	87		0.992554
2154	25			75	1.0
2155		12		87	0.992554
2184	66	33			1.0
2185		33		66	1.0
2186		33		66	1.0
2189			66	33	1.0
2197		25	75		0.996473
2198	75	25			0.996473
2199	75	25			0.996473
2201		25	75		0.996473
2203	25		75		0.996473
2205			33	66	0.997452
2206	33	66			0.997452
2211		33	66		0.997452
2215			33	66	0.997452
2217		33	66		0.997452
2218	33	66			0.997452
2220			33	66	0.997452
2221	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain