SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3707

Length: 1939 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3707

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PRLI-interacting factor, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	prli-interacting factor a	-	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A846

Fln msg: your sequence is longer than subject: 399 - 138

Fln protein: MMMMMGQGDKSHNNPGPPPPPTYKVWNNGGNFIMGSNPRSRDDIPAHLNLNPSSTSFKGVMPRGGVTFLASKQSRPNWKARKAEKRKEQRRNNNNNKGNEAQGTLQGRPYEPPRLHELQAQNRLKARRFYAKKKQHRVAPYAPRNTTSFIIRAKKSGGIASLVSPCPVTPAILPTPVISPAPASEGLIDMAKEEWGVNGYGSMKGLIRLRDNGFEVDARGDEDCSSESDVDEHVEEHVEMERRLDHDLSRFEMIYPYMSSPMFDGSNPLETRVIDQESQLARLEEENLTLKERLFLMEQEMQDLRRRLQHLECGAANPNNNTNNNNCVNSNTNCNAMDNVVSDEDAAEVCSEKSVGDGDGQGDRDGAAEVCSEKSVGDGEAQGDRDENGDGDAPGACH*

Protein Length: 400

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCTCTTTGCGTCTCTCTGCAAGAATCACTGGTTCTCTCTGTGAAGAAAATAAATATCTCCATTTTATACATATATTTCCGCTTTTTCTTTGGCTGTGCGCGACAGATTAAGTATACGGCTTCTTGCCCTATAAAATCCTGTACAATCAAATCTTGTATTTACCCTAGATTTAGGTTTCTTTTTCAGTTTTCTGCTGAAAACCCAAATTGGTTCTGAAAACCTGAGTATTGGTTTTGTGTAGATT_-_ATGATGATGATGATGGGTCAGGGGGATAAGAGCCATAACAATCCAGGGCCTCCCCCTCCTCCAACTTATAAGGTCTGGAACAATGGGGGGAATTTTATCATGGGTTCAAACCCTAGATCTCGGGATGATATACCTGCTCATTTGAATTTAAATCCCTCCTCCACTTCTTTCAAGGGTGTTATGCCACGAGGCGGTGTAACTTTTCTGGCTTCGAAACAGTCCAGGCCTAATTGGAAGGCCCGCAAGGCCGAGAAGCGCAAAGAACAGAGGCGTAATAATAATAACAACAAAGGAAATGAGGCACAGGGGACGTTGCAAGGTCGACCTTACGAGCCACCAAGATTACACGAACTACAGGCACAAAACCGCCTCAAGGCCCGGCGGTTTTACGCCAAGAAAAAGCAACACAGGGTCGCGCCCTATGCCCCTCGCAATACAACCTCTTTCATCATAAGGGCCAAGAAATCCGGCGGCATTGCGTCTCTGGTTTCACCTTGCCCGGTAACCCCAGCCATTCTTCCCACCCCGGTCATATCGCCAGCCCCCGCCAGCGAGGGTTTGATAGACATGGCTAAGGAGGAATGGGGCGTCAATGGCTACGGTTCCATGAAGGGGCTAATACGGCTCAGGGACAACGGTTTCGAGGTCGATGCAAGGGGCGATGAGGACTGCTCCAGCGAGAGTGACGTGGACGAGCACGTGGAGGAACACGTGGAGATGGAGCGAAGGCTGGACCATGATTTGAGTCGTTTCGAGATGATTTACCCTTACATGTCGTCGCCAATGTTCGATGGTTCGAATCCACTGGAGACTAGGGTTATAGACCAGGAAAGCCAGCTGGCCCGCCTGGAAGAAGAGAATCTCACGTTGAAGGAACGGCTGTTTTTGATGGAGCAAGAAATGCAGGACCTGAGGCGGCGTTTACAGCATCTGGAGTGTGGTGCTGCTAACCCTAATAACAATACTAACAATAATAATTGTGTTAACAGCAACACTAACTGCAATGCAATGGATAATGTTGTCTCAGATGAAGATGCTGCCGAGGTTTGTTCTGAAAAGAGCGTTGGGGACGGGGACGGACAAGGAGACAGAGATGGAGCTGCCGAGGTTTGTTCAGAAAAGAGCGTTGGGGACGGGGAGGCACAAGGAGACAGAGACGAGAATGGAGATGGAGATGCACCTGGTGCTTGTCATTAA___TTCGCCATTTTAATTTGAAAGCAATTGCAGGGGTTTTTAGGCCAGTGAAATCTTAATTGTAAAGAACTTTAGAGCAGGGTATTCATTTAATGTAATTTTTTTGTTCCAAACCTCTGTATAATGTTTATAGAATTACTGCAATGCTGACTCAATGTTCTTCGTGGGAGGAGCTCGAATTAGAGAGATCTCATTCATAATTTTTTTTCCTTAGGCAATTTAAAGACTTCATTTGGCCTCCGATGTACAGGATCCTTCAAACTCAATGGGTATGTGAATCACTGGGTAGCTTTCAAAGTGAGCCATGAGCCATAGATTAATCTTGGCATAGTTTTAGTTTATAGCTCTAATGTGGAATTAGAGATGTGAAAAAACCTTAATGCCCACTCTGAATTATGTAAAGATATGTTAACATCATAATATTGATATCTCCCACCATTCTACAATTTATTAAAGCTTTTTTGTTTGGTTAA

Fln Alignment:

sp_v1.1_unigene3707___MERRLDHDLSRFEMIYPYMSSPMFDGSNPLETRVIDQESQLARLEEENLTLKERLFLMEQEMQDLRRRLQHLECGAAXXXXXXXXXXXXXXXXXXXAMDNVVSDEDAAEVCSEKSVXXXXXXXXXXXAAEVCSEKSVGDGEAQGDRDENGDGDAPGACH
D5A846______________MERRLDHDLSRFEMIYPYMSSPMFDGSNPLETRVIDQESQLARLEEENLTLKERLFLMEQEMQDLRRRLQHLECGATNPNNNTNNNNCVNSNTNCHAMDNAVSDEDAAEV---------------------CSEKSVGDGDGEGDRGGDGDGDASAACH

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
190		60		40	1.0
1338			80	20	0.995493
1343		66	33		0.997452
1344	33		66		0.997452
1354	66			33	0.997452
1493	90		10		0.90298
1494		20		80	0.999996
1495			10	90	0.90298
1499		10	90		0.90298
1500			90	10	0.90298
1541	12		87		0.992554
1619		36	36	27	1.0
1640	10	90			0.90298
1649	11		88		0.923564

SSRs (tot: 2)

Start position	End position	Sequence	Length
273	287	ATG ATG ATG ATG ATG	15
545	556	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain