SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3701

Length: 2361 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3701
GATTGGCAAGGAGAGCAGAGGAATTTCTTCAGATTATCGTAGGCCGCCTCCGCTACTCAATTTTTGCAGCAACGCCAACGCCAACGCCAACGATCCAGCGGGGCCTTGGCACGATGAAACGCTGGTGCTCTCCACTACTCCGCACAAGAGGGTCAATCTTCACCAGGGAGCTGTGATGCATCCAGAGCACCGCCACGCCGAGGTAGCCACCAGGGCTGGAGGCTTTGCTCGGGCGCCTTCGTTGCTGTCGCGTTGCCCAACGATTAAGGGCAGGATCGACAGCTTCGCTTCACTGGGCGACGCCACGGCCACGGCCGCGGCGACCGCGATCTTGCAACACAGAGGACTTGGAGGTCGGAGGTTCAAGTCGCTGCAGGTCCTACTGCCGCCCTTTGTGGTCGTGTCGGTGCCCTGTTTCTGGTGGTACCTGAAGGTGCTGCGGGCGGAGAAACGGCTTGTGGATTCGCAGTCCGATAGCGACACGATCGTGGTCGTGGGCCTCTGGTTCGATTTCTTCGCAGCGCTGGTGTTTGTTACAGCCGTGGTCATATCACTCAAGATCGCCTTCCCGCGCCTCGCGCTAGCGCTGCCGTGGTCCTTGCGGCAGAGCTGGGGTTCCTTCGCGGTCGCGTGGTCGAAACCCCTCGCGACGCTCCTGTCAGACGATAAGGAAAAGAGGAGGAATAAATCTTTTTCCAGGGCTTTTTCCAGGCCCACGGTTACATGGACGATAGGGTCAAAGCCTAAGGTGGAGAGGAGCCTCAGCAAGGTGTCGACCGAAGGAGTCCAGGTCTACAAAAACGGGGATGTTTATGAGGGGGAATTTCATCAGGGCAAATGCTCCGGCAGCGGGGTGTATTATTATTATATGAGTGGGCGTTATGAGGGAGATTGGGTCGATGGGAAGTATGATGGTTATGGTGTGGAAACCTGGGCGAAAGGAAGCCGCTACAGGGGGCAGTATAGGCAAGGCATGAGACATGGTTATGGTGTTTACAGGTTTTACACTGGAGATGTCTATACGGGGGAGTGGTCGAATGGGCAGAGCCATGGCTACGGCGTCCACACTTGTGAAGATGGCAGTAGGTATGTTGGGGAGTTTAAGTGGGGCGTCAAGCATGGCCTCGGATACTACCACTTCCGAAATGGTGATACCTATGCCGGAGAGTACTTTTCAGATAAAATGCATGGGTTTGGTGTTTACCATTTTGCCAATGGTCACCGTTATGAGGGTGCATGGCATGAGGGAAGAAAGCAAGGTCTGGGAATGTATATATTTAGAAATGGTGAAAGACAGTCTGGCCACTGGCATCATGGTGTTTTAGAGACTCCTAGTACACAGAATTCTCAGCCAAGATCTCCCATGGCTGTGAACCATTCAAAAGTCTTGAATGCAGTACAGGAAGCAAGGCGAGCAGCAGAAAGGGCATTTGAAACTCCTCCAGTTGATCAAAGAGTAAATAAGGCTATATCTGGTGCCAACAGAGCGGCTAATGCAGCAAGGATTGCTGCAGTTAAAGCTGTTCAGAAGAGGATGCATGTCAATGTGCCAATTCCAGACGTCTAGGGGGCTGACCTTCTAGTACCTTATCTCACAACCTCAATTGCTGGTCGGAATTTCTACTGAGTTGTACCTTTTGTGGCTGCTAAAATCTCATAAGATCAATTGATACACCAAGTCATCATTATGATAGCCAGATATGGTGGGTGTATTTAATGGTTTGTGCCTCGTTTTAAATGGAAAAAAAATAAGGGCAGCAGCAGCTATAATCCTCACTGATCCCAGTTTAGAGAGAACTTGCTTTTGAAGCTGACACTTCTTATCTGGGAGATCTACATCATGAATGTATTTTTTAGCTGAAGGAGGAAACCTGTGCTAAGAAATATCTTTTCATTCAGTTGTAAATAGAGTGAATCTCAGGATGAAGCCATGCCCCTGAGGAGTATTGTATAGTATTTGCGTGCCTTTTTGAGATTGCCTTTTTCATGCGGTGTTCAAGTAAGGATCTTTTACTGGTGGCTAAGCAAAAAGCTTGGCACCTCGTTAGCAGTGGTTACGGAGGCAAGTTCAGATATGTATAAAAGAGAAATAGTATGTGAATATGGATTGGATTACCATTAAGTACAATAAGCATGTATTTTATGAAATCTCAAGTACTTTATTAAGTTACGGGGATGTGGAATCTCGAACTGCAAACCTGATGATTTCACATATTTCATTATAGATTAGTGAGCGTGCTACTTGTGTTCTTTGCAGTTTAGTTGCCTCATTGAAGTTGGTTTAAAAACCAGGCATTTAGGCAAATATTCCCAGTGGGATGGATTGTGCATTTGAATTTTTTGAATAGATGGACTTCGACC

Ace file of the UniGene sp_v1.1_unigene3701

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-phosphatidylinositol-4-phosphate 5-kinase, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein Sb01g028730; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	77%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	MORN motif	IPR003409	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C5WRG6

Fln msg:

Fln protein: MHPEHRHAEVATRAGGFARAPSLLSRCPTIKGRIDSFASLGDATATAAATAILQHRGLGGRRFKSLQVLLPPFVVVSVPCFWWYLKVLRAEKRLVDSQSDSDTIVVVGLWFDFFAALVFVTAVVISLKIAFPRLALALPWSLRQSWGSFAVAWSKPLATLLSDDKEKRRNKSFSRAFSRPTVTWTIGSKPKVERSLSKVSTEGVQVYKNGDVYEGEFHQGKCSGSGVYYYYMSGRYEGDWVDGKYDGYGVETWAKGSRYRGQYRQGMRHGYGVYRFYTGDVYTGEWSNGQSHGYGVHTCEDGSRYVGEFKWGVKHGLGYYHFRNGDTYAGEYFSDKMHGFGVYHFANGHRYEGAWHEGRKQGLGMYIFRNGERQSGHWHHGVLETPSTQNSQPRSPMAVNHSKVLNAVQEARRAAERAFETPPVDQRVNKAISGANRAANAARIAAVKAVQKRMHVNVPIPDV*

Protein Length: 465

Fln nts: GATTGGCAAGGAGAGCAGAGGAATTTCTTCAGATTATCGTAGGCCGCCTCCGCTACTCAATTTTTGCAGCAACGCCAACGCCAACGCCAACGATCCAGCGGGGCCTTGGCACGATGAAACGCTGGTGCTCTCCACTACTCCGCACAAGAGGGTCAATCTTCACCAGGGAGCTGTG_-_ATGCATCCAGAGCACCGCCACGCCGAGGTAGCCACCAGGGCTGGAGGCTTTGCTCGGGCGCCTTCGTTGCTGTCGCGTTGCCCAACGATTAAGGGCAGGATCGACAGCTTCGCTTCACTGGGCGACGCCACGGCCACGGCCGCGGCGACCGCGATCTTGCAACACAGAGGACTTGGAGGTCGGAGGTTCAAGTCGCTGCAGGTCCTACTGCCGCCCTTTGTGGTCGTGTCGGTGCCCTGTTTCTGGTGGTACCTGAAGGTGCTGCGGGCGGAGAAACGGCTTGTGGATTCGCAGTCCGATAGCGACACGATCGTGGTCGTGGGCCTCTGGTTCGATTTCTTCGCAGCGCTGGTGTTTGTTACAGCCGTGGTCATATCACTCAAGATCGCCTTCCCGCGCCTCGCGCTAGCGCTGCCGTGGTCCTTGCGGCAGAGCTGGGGTTCCTTCGCGGTCGCGTGGTCGAAACCCCTCGCGACGCTCCTGTCAGACGATAAGGAAAAGAGGAGGAATAAATCTTTTTCCAGGGCTTTTTCCAGGCCCACGGTTACATGGACGATAGGGTCAAAGCCTAAGGTGGAGAGGAGCCTCAGCAAGGTGTCGACCGAAGGAGTCCAGGTCTACAAAAACGGGGATGTTTATGAGGGGGAATTTCATCAGGGCAAATGCTCCGGCAGCGGGGTGTATTATTATTATATGAGTGGGCGTTATGAGGGAGATTGGGTCGATGGGAAGTATGATGGTTATGGTGTGGAAACCTGGGCGAAAGGAAGCCGCTACAGGGGGCAGTATAGGCAAGGCATGAGACATGGTTATGGTGTTTACAGGTTTTACACTGGAGATGTCTATACGGGGGAGTGGTCGAATGGGCAGAGCCATGGCTACGGCGTCCACACTTGTGAAGATGGCAGTAGGTATGTTGGGGAGTTTAAGTGGGGCGTCAAGCATGGCCTCGGATACTACCACTTCCGAAATGGTGATACCTATGCCGGAGAGTACTTTTCAGATAAAATGCATGGGTTTGGTGTTTACCATTTTGCCAATGGTCACCGTTATGAGGGTGCATGGCATGAGGGAAGAAAGCAAGGTCTGGGAATGTATATATTTAGAAATGGTGAAAGACAGTCTGGCCACTGGCATCATGGTGTTTTAGAGACTCCTAGTACACAGAATTCTCAGCCAAGATCTCCCATGGCTGTGAACCATTCAAAAGTCTTGAATGCAGTACAGGAAGCAAGGCGAGCAGCAGAAAGGGCATTTGAAACTCCTCCAGTTGATCAAAGAGTAAATAAGGCTATATCTGGTGCCAACAGAGCGGCTAATGCAGCAAGGATTGCTGCAGTTAAAGCTGTTCAGAAGAGGATGCATGTCAATGTGCCAATTCCAGACGTCTAG___GGGGCTGACCTTCTAGTACCTTATCTCACAACCTCAATTGCTGGTCGGAATTTCTACTGAGTTGTACCTTTTGTGGCTGCTAAAATCTCATAAGATCAATTGATACACCAAGTCATCATTATGATAGCCAGATATGGTGGGTGTATTTAATGGTTTGTGCCTCGTTTTAAATGGAAAAAAAATAAGGGCAGCAGCAGCTATAATCCTCACTGATCCCAGTTTAGAGAGAACTTGCTTTTGAAGCTGACACTTCTTATCTGGGAGATCTACATCATGAATGTATTTTTTAGCTGAAGGAGGAAACCTGTGCTAAGAAATATCTTTTCATTCAGTTGTAAATAGAGTGAATCTCAGGATGAAGCCATGCCCCTGAGGAGTATTGTATAGTATTTGCGTGCCTTTTTGAGATTGCCTTTTTCATGCGGTGTTCAAGTAAGGATCTTTTACTGGTGGCTAAGCAAAAAGCTTGGCACCTCGTTAGCAGTGGTTACGGAGGCAAGTTCAGATATGTATAAAAGAGAAATAGTATGTGAATATGGATTGGATTACCATTAAGTACAATAAGCATGTATTTTATGAAATCTCAAGTACTTTATTAAGTTACGGGGATGTGGAATCTCGAACTGCAAACCTGATGATTTCACATATTTCATTATAGATTAGTGAGCGTGCTACTTGTGTTCTTTGCAGTTTAGTTGCCTCATTGAAGTTGGTTTAAAAACCAGGCATTTAGGCAAATATTCCCAGTGGGATGGATTGTGCATTTGAATTTTTTGAATAGATGGACTTCGACC

Fln Alignment:

sp_v1.1_unigene3701___RAFSRPTVTWTIGSKPKVERSLSKVSTEGVQVYKNGDVYEGEFHQGKCXXXXXXXXXXXXXXEGDWVDGKYDGYGVETWAKGSRYRGQYRQGMRHGYGVYRFYTGDVYTGEWSNGQSHGYGVHTCEDGSRYVGEFKWGVKHGLGYYHFRNGDTYAGEYFSDKMHGFGVYHFANGHRYEGAWHEGRKQGLGMYIFRNGERQSGHWHHGVLETPSTQNSQPRSPMAVNHSKVLNAVQXXXXXXXXXXXTPPVDQRVN
C5WRG6______________RRARRSPILWSIGSSPSASAT-TPTTGHFVQVYSNGDVYEGQFHRGRCTGSGVYYYYMSGRYEGDWVDGKYDGFGVETWARGSRYRGQYRQGLRHGYGVYRFYTGDVYAGEWSNGQSHGYGVHTCEDGSRYIGEFKRGVKHGLGHYHFRNGDTYAGEYFADRMHGFGIYSFANGHRYEGAWHEGRRQGLGMYSFRNGETQAGHWQNGVLDTLSTQNFVPGSPIAVNHSKVLNAVQEARRAAEKAYDIPRVDDKVN

SNPs (tot: 109)

Position	A %	C %	G %	T %	Probability
517		80	20		0.995493
520	80			20	0.995493
524	20		80		0.995493
527		20	80		0.995493
528	20		80		0.995493
811		20	80		0.995493
812			20	80	0.995493
814		20		80	0.995493
815	80		20		0.995493
819		20	80		0.995493
820		20	80		0.995493
821			80	20	0.995493
822			80	20	0.995493
824	83		16		0.994512
825	83	16			0.994512
827			16	83	0.994512
844			14	85	0.993533
845		85		14	0.993533
848			85	14	0.993533
849		85	14		0.993533
851		14	85		0.993533
853			85	14	0.993533
856		14	85		0.993533
858	14		85		0.993533
862	14			85	0.993533
876		14		85	0.993533
884	85	14			0.993533
885			14	85	0.993533
886		14	85		0.993533
889			85	14	0.993533
893	85		14		0.993533
894	14			85	0.993533
895		14		85	0.993533
896	14		85		0.993533
899		14		85	0.993533
980		22	11		0.999999
982	66			22	0.999999
984	77		22		0.999999
987	22		77		0.999999
988		22		77	0.999999
989		22		77	0.999999
990	77			22	0.999999
998		25		75	1.0
1001	75			25	1.0
1002		28	71		1.0
1003	28		71		1.0
1008	85		14		0.993533
1090	10		90		0.90298
1091	10			90	0.90298
1095			11	88	0.923564
1099	12		87		0.992554
1100			87	12	0.992554
1103		12		87	0.992554
1104		12		87	0.992554
1107	87			12	0.992554
1109		12		87	0.992554
1112	12		87		0.992554
1114	12	87			0.992554
1174		80		20	0.995493
1248		25		75	0.996473
1478		88	11		0.923564
1479			11	88	0.923564
1494	33		66		1.0
1503	55		44		1.0
1507	90		10		0.90298
1619	10		90		0.90298
1665	90		10		0.90298
1681		40	60		1.0
1785		12	87		0.992554
1786	87		12		0.992554
1789		87		12	0.992554
1790		87	12		0.992554
1792		12	87		0.992554
1793		12		87	0.992554
1796	87		12		0.992554
1798	87	12			0.992554
1799			87	12	0.992554
1800	87		12		0.992554
1801			87	12	0.992554
1802	87	12			0.992554
1806		12		87	0.992554
1807	12		87		0.992554
1808	10	90			0.90298
1809		10		90	0.90298
1810		20		80	0.999996
1811		20	10	70	0.999998
1816		10	90		0.90298
1817		90		10	0.90298
1822	90			10	0.90298
1823		90	10		0.90298
1825	10			90	0.90298
1828		10		90	0.90298
1842	80			20	0.999996
1894	11	88			0.923564
2030	89	10			1.0
2032		89		10	1.0
2033	85	10			1.0
2034	85	3	10		1.0
2035	85			14	1.0
2036	85		10	3	1.0
2038		10	89		1.0
2046		90		9	1.0
2047		87	12		1.0
2050	9		90		1.0
2051		9		90	1.0
2054		12	87		1.0
2055	9	90			1.0
2065	16	3	80		1.0
2334			75	25	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
70	92	CAACGC CAACGC CAACGC CAACG	23
857	868	TAT TAT TAT TAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain