SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3687

Length: 1603 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3687 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FH2 domain containing protein	-	-	42%
FL-Next	sp=Formin-like protein 6; Oryza sativa subsp. japonica (Rice).	-	-	74%
Blast2go	actin binding	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actin-binding FH2/DRF autoregulatory	IPR003104	-	0.0	86%
Blast2go	Actin-binding FH2	IPR015425	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q6ZCX3

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 294 - 1364

Fln protein: EEMDLLRGYNGERENLGKCEQVFLEMMKVPRVESKLTVFAFKSQFISQVSDLRKSLNIVKYASQEVRESIKLRRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLIDTRARNNKMTLMHYLCKVLAEKLPELLDFNKDLAHLEAASKRQLKTLAEEMQAVSKGIEKVEQELTASENDGPVSDGFRMLLKGFLVDAEADVKSLTYLYSEVGRSADALALFFGEDPARCPFEQVVSTLLNFVTMFRRAHEENVKQAELERKKAEKDAEKERLKLSPLRIDAGEQLPSPLRRKLK*

Protein Length: 295

Fln nts: AAGAAGAAATGGATCTCCTCAGGGGATATAATGGAGAGAGAGAGAATCTGGGCAAGTGTGAGCAGGTTTTCTTGGAGATGATGAAAGTTCCAAGAGTGGAGTCTAAATTAACAGTATTCGCTTTCAAGAGTCAGTTTATCTCTCAGGTTTCTGACCTACGAAAAAGTCTAAACATTGTAAAATATGCATCTCAGGAGGTTAGGGAATCTATCAAGCTACGGAGAATTATGCAAACAATTCTTTCTTTAGGAAATGCATTGAATCAGGGAACTGCACGGGGTTCTGCTATTGGCTTTAGGCTGGATAGTCTTCTGAAATTGATAGATACACGTGCCCGCAACAACAAGATGACTCTGATGCACTATCTTTGTAAGGTTCTTGCTGAGAAACTACCAGAGCTACTTGATTTTAATAAGGATCTTGCTCATTTGGAGGCTGCATCAAAGAGGCAATTGAAGACATTGGCTGAGGAGATGCAAGCTGTAAGCAAAGGCATAGAAAAAGTTGAGCAGGAACTAACTGCATCGGAGAACGATGGTCCAGTATCTGACGGGTTTAGGATGCTATTGAAGGGATTCCTTGTTGATGCTGAAGCTGATGTGAAATCTCTGACCTACCTCTATTCAGAAGTGGGTCGAAGTGCAGATGCGCTTGCTCTATTTTTTGGGGAAGACCCTGCACGATGTCCTTTCGAACAGGTGGTTTCGACTCTTCTCAACTTTGTGACAATGTTTAGACGGGCACATGAAGAGAATGTTAAACAAGCTGAACTTGAAAGAAAGAAAGCTGAAAAGGATGCAGAAAAGGAGAGGTTGAAACTTTCTCCTTTGAGGATAGATGCTGGAGAACAACTGCCATCTCCTCTCAGAAGGAAGTTGAAATAA___TAATGATGAACACATTTTTGGCTTATTGTAACACTTTAAGTGCATATTCATTATTGCCCATAGTGCAGGAAGATGCCCTTTACTCACACAGTGCATGAGGTGATGCATTTATTGGAACGTTGGCAACAATGATACAGACATCATTTACCGATATTCCAATTGCACTTGTAAAACTATCAAATATTCATTTGCAAAATTGCAAAGTTCTGTATTTACTATAGACTGAACAAGTATATGGGGCAACGGCAAAAATAAGGGCATCGTAAGTCAGGATTTAACATTGGCTGGTGTACAGATGTTCTTATGCAGTTTCTGGTTGTACACAGAGTTTTTATGTAATGATAGCAGACCTTCAGCTTCGGATATTCGATAAATTATTCAACCATTCCAGATTCAGTTTCTTATCTGCAGTCCCGAATTCTTCAATCTCTTGTGGATGCTTCTCTATAAATTGTACTCAAATTATTTACTCTTTCAAGAATATATTTTTGCTGGAGAGCACAGCAACAATGTGTATACTGAATCTTCATTTATGAGTGCCAGGCAAAGAGCTTATTCACCAACAACCTGTGTTTGGAATTTCGTTGTTCTTAAGATTGGTAAAGTTTATTTTGTGACAATTGTGGTAACGTGATTCCAAATGCATTATTTGAAAGGATGTACCTTTAGTTAGATAAAATTTTAAGCTCCCTCATGAAATAAGAAACACATTGGATAAG

Fln Alignment:

sp_v1.1_unigene3687___EEMDLLRGYNGERENLGKCEQVFLEMMKVPRVESKLTVFAFKSQFISQVSDLRKSLNIVKYASQEVRESIKLRRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLIDTRARNNKMTLMHYLCKVLAEKLPELLDFNKDLAHLEAASKRQLKTLAEEMQAVSKGIEKVEQELTASENDGPVSDGFRMLLKGFLVDAEADVKSLTYLYSEVGRSADALALFFGEDPARCPFEQVVSTLLNFVTMFRRAHEENVKQ
Q6ZCX3______________EEAELLKGYKGDKQVLGECEQFFMELMKLPRVDSKLRVFLFKIQFPSQVSDLKRSLNIVNSSAEEIRGSAKLKRIMQTILSLGNALNQGTARGSAVGFRLDSLLKLSDTRARNNKMTLMHYLSKVLSEKLPELLDFPKDLASLELAAKVQLKSLAEEMQAINKGLEKVEQELTTSENDGPVSEIFRKTLKDFLSGAEAEVRSLTSLYSNVGRNADALALYFGEDPARCPFEQVVITLQNFVRLFVRSHDENCKQ

SNPs (tot: 4)

Position	A %	C %	T %	Probability
1161		66	33	0.997452
1430		33	66	0.997452
1431		33	66	0.997452
1432	33		66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
818	830	CTTT CTTT CTTT C	13
1559	1570	TC TC TC TC TC TC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain