SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3684

Length: 220 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene3684
ACTTCTTACACGACATGGGGAAAGTCGTGACAATGTAAGGGGAAGAATTGGAGGAGACTCAGTGTTAAGTGAAGATGGGGAACACTATGCAAAGAAATTGGCTGATTTTGTTAACAAGAGACTAAGATCTGAGCGTGCTGCTTCTATATGGACAAGCACTTTGCAAAGAACAATATTGACAGCGCGCCATATCGGTGGATTCCCAAAGATACAATGGCGT

Ace file of the UniGene sp_v1.1_unigene3684

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F2KP; F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase; K00900 6-phosphofructo-2-kinase [EC:2.7.1.105]; K01103 fructose-2,6-bisphosphatase [EC:3.1.3.46]	-	-	9.0e-26	79%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	83%
Blast2go	protein	-	-	2.12266e-27	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphate 2-phosphatase.	EC:3.1.3.46	-	2.12266e-27	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		2.12266e-27	88%

Source	ECs	Term	Type	e value	Identity
AutoFact	6-phosphofructo-2-kinase.	EC:2.7.1.105	-	9.0e-26	79%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Fructose and mannose metabolism	00051		9.0e-26	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	fructose metabolic process	GO:0006000	Biological Process	2.12266e-27	88%
Blast2go	fructose-2,6-bisphosphate 2-phosphatase activity	GO:0004331	Molecular Function	2.12266e-27	88%
Blast2go	cytosol	GO:0005829	Cellular Component	2.12266e-27	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	2.12266e-27	88%
Blast2go	Fructose-2,6-bisphosphatase	IPR003094	-	2.12266e-27	88%
Blast2go	Histidine phosphatase superfamily, clade-1	IPR013078	-	2.12266e-27	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HND2

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 73 - 498

Fln protein: LLTRHGESRDNVRGRIGGDSVLSEDGEHYAKKLADFVNKRLRSERAASIWTSTLQRTILTARHIGGFPKIQWR

Protein Length: 74

Fln nts: ACTTCTTACACGACATGGGGAAAGTCGTGACAATGTAAGGGGAAGAATTGGAGGAGACTCAGTGTTAAGTGAAGATGGGGAACACTATGCAAAGAAATTGGCTGATTTTGTTAACAAGAGACTAAGATCTGAGCGTGCTGCTTCTATATGGACAAGCACTTTGCAAAGAACAATATTGACAGCGCGCCATATCGGTGGATTCCCAAAGATACAATGGCGT

Fln Alignment:

sp_v1.1_unigene3684___LLTRHGESRDNVRGRIGGDSVLSEDGEHYAKKLADFVNKRLRSERAASIWTSTLQRTILTARHIGGFPKIQWR
B9HND2______________LLTRHGESRDNVRGRIGGDTVLSDAGEIYAKKLANFVEKRLKSEKAASIWTSTLQRTIITASPIIGFPKIQWR

SNPs (tot: 4)

Position	A %	G %	T %	Probability
38	85	14		0.993533
43	85	14		0.993533
173	80		20	0.995493
174	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain