SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3679

Length: 516 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3679
CTTGTACATATAAAGCTGTTCAACAGGCTTGTAAAGACATGCAAAATTCATTAAAGCATCCTGCCAAGGAAGTGGCAGGTTCAAATGCTGTTTTCCAGAATGTAAATTGGATTCCTGTAGGTGGATTGAAATTTATGAAAACCCCAAGGCCCATGAGGAAATAAACCAGACATCATTTGCTCCATATTTGAAAAGGAATGGGCTGCATTGCAGAGAGATTTCTCGAAACATTTAAAAGGCTCTGATGAAGTAGCAACAGAAAGTACAAACCAGGAAGGCCAACCCATAGTAAGGGATATCGAATGTGGGTGTTGCTATTGTGAATTTTCATTTGAAGAGATGGTACAGTGTGCAGATGGACATCTATTTTGTTCTCGTTGTTTACGGAAGCATGTAGAAGAAATCACATTCGGGGGCTTCAAATCACATGCCTTTATACCTTGCATGGATACTGGTGGCTGCAATGAGTCAATTCCTTTGTCAGAGGTTCGGAGAGCTCTTCCGAGTGATATCATT

Ace file of the UniGene sp_v1.1_unigene3679 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to ring finger protein 216; K11976 TRIAD3; E3 ubiquitin-protein ligase RNF216 [EC:6.3.2.19]	-	-	1.0e-15	46%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	43%
Blast2go	e3 ubiquitin ligase	-	-	1.19557e-23	59%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.0e-15	46%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.19557e-23	59%
Blast2go	nucleus	GO:0005634	Cellular Component	1.19557e-23	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RAB5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 164 aas, your sequence is shorter than subject: 172 - 459

Fln protein: LVHIKLFNRLVKTCKIH*SILPRKWQVQMLFSRM*IGFL*VD*NL*KPQGP*GNKPDIICSIFEKEWAALQRDFSKHLKGSDEVATESTNQEGQPIVRDIECGCCYCEFSFEEMVQCADGHLFCSRCLRKHVEEITFGGFKSHAFIPCMDTGGCNESIPLSEVRRALPSDII

Protein Length: 173

Fln nts: CTTGTACATATAAAGCTGTTCAACAGGCTTGTAAAGACATGCAAAATTCATTAAAGCATCCTGCCAAGGAAGTGGCAGGTTCAAATGCTGTTTTCCAGAATGTAAATTGGATTCCTGTAGGTGGATTGAAATTTATGAAAACCCCAAGGCCCATGAGGAAATAAACCAGACATCATTTGCTCCATATTTGAAAAGGAATGGGCTGCATTGCAGAGAGATTTCTCGAAACATTTAAAAGGCTCTGATGAAGTAGCAACAGAAAGTACAAACCAGGAAGGCCAACCCATAGTAAGGGATATCGAATGTGGGTGTTGCTATTGTGAATTTTCATTTGAAGAGATGGTACAGTGTGCAGATGGACATCTATTTTGTTCTCGTTGTTTACGGAAGCATGTAGAAGAAATCACATTCGGGGGCTTCAAATCACATGCCTTTATACCTTGCATGGATACTGGTGGCTGCAATGAGTCAATTCCTTTGTCAGAGGTTCGGAGAGCTCTTCCGAGTGATATCATT

Fln Alignment:

sp_v1.1_unigene3679___KPDIICSIFEKEWAALQRDFSKHLKGSDEVATESTNQEGQPIVRDIECGCCYCEFSFEEMVQCADGHLFCSRCLRKHVEEITFGGFKSHAFIPCMDTGGCNESIPLSEVRRALPSDII
D8RAB5______________RPRKSCPLFDREFEIVKRRIAKEEKEAS-----------------FECGCCFSECSFEQLAQCVDGHLFCFSCLRRHVEEATFGGGQSYTVLSCMDTAGCSGFFPASEVSRALPADVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain