SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3671

Length: 1456 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3671

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	48%
Blast2go	traf type zinc finger domain containing 1	-	-	4.2039e-45	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	4.2039e-45	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GN75

Fln msg:

Fln protein: MAAPPNIGATKLCSHCEREVPTANFDLHHAHCIRNLQRCTVCGDMIPKSRSTEHHQDTHAPVSCSQCGESVERELLVIHERDKCLHRIVACGYCEFPLPAVDLDKHLNICGNRTEYCNPCGKYVRLCEKLAHDLQFHEGNSDDTGDSSREQHGENNHSSPAELSRRVPRERPRDTSQRRWLVTLAITGIAIIIGSFVLQRRNPSQQQ*

Protein Length: 209

Fln nts: ATGGGGAGCGTTTACTTCATTCCATGAAACAAAAAGGGAGATGTGGCATAACTTAAGCTTGAAGATTAACTTATGGCCAGAAGAAACTTAAATTTTGAATGTGGTTTCTTTGATTCATGTCAGATCGCGCTGGTTTAGGGTCCACCAAACCATATGTCAGATCGCGTTGGTTTAGGGGCCACAATACCATATATCATCAGTACACATAGTAAATTCATTACATCAACCTCCACAGTCATTCTTACAGGCCTTCTCAAATAATTCCGTGTGCAGAACGACATACATTGCAGAGGACCCTGTGAGGACAAATTTGGGTATTCGATCAAAAGATTTCTGAGCTCCCGCT_-_ATGGCGGCACCTCCCAATATCGGTGCCACTAAGCTTTGTTCTCACTGCGAGAGAGAAGTGCCAACTGCAAACTTTGATTTACACCATGCTCACTGTATACGGAACTTGCAGCGCTGCACTGTTTGCGGAGATATGATTCCAAAAAGTCGTTCTACGGAACACCACCAGGATACCCATGCTCCTGTATCTTGTTCACAGTGTGGCGAATCCGTTGAACGTGAATTACTAGTCATCCATGAACGTGACAAGTGTCTTCATAGAATTGTTGCATGTGGTTATTGCGAGTTTCCACTGCCAGCTGTTGATCTTGATAAACATCTGAACATCTGTGGGAATAGAACAGAGTATTGTAATCCGTGCGGCAAGTATGTGAGATTGTGTGAAAAGCTAGCTCATGATTTACAGTTCCATGAAGGAAATTCTGATGACACTGGGGATTCTTCAAGAGAGCAGCACGGGGAAAATAATCACAGCTCACCAGCAGAACTGTCTCGGAGAGTTCCTAGGGAACGGCCACGAGATACCTCGCAGCGTCGTTGGCTTGTCACATTAGCAATCACAGGAATTGCCATAATTATAGGATCATTTGTTCTTCAAAGACGCAATCCTAGTCAACAACAATAA___CATGTAATTTTACACCACTGTATATGCTTATGCTTAATGTGATGGTGCATATGATGTGACCGAAAAATAAACTTTGTTTTGCCCAATTAGACTGGCTGTATATGTCTGGAGTCGTATACTTGAAAATTGGACTTGTTTCCCATCGCACAAATTGGTTTTGAGAAGTATTCTAGATTATTTGGCTCAGTTCATTATTGAAATTGAAATACATAAACTATAATTCATATATGAAATCACAGCAAGGAGGACATCACTTTGTTATTCTCATATTTTCAAAGCTTTTCAATAATGGAAGTTCTTGTCTATGGAACTTGAATCGCTTTGATGTAAAACTTGATCAAACTGTTGTATGGGTGCAGTCCTCAAACATGTGGCTTAGCTATTTTAGGTGCTTTTAAGTTATCCCTTGATGGATTTTGCAGGATGTGACGTAAATTTATGTTGTTCATCAATGATTCTATTTCCTAATATATAGAACCAGTGTTC

Fln Alignment:

sp_v1.1_unigene3671___ATKLCSHCEREVPTANFDLHHAHCIRNLQRCTVCGDMIPKSRSTEHHQDTHAPVSCSQCGESVERELLVIHERDKCLHRIVACGYCEFPLPAVDLDKHLNICGNRTEYCNPCGKYVRLCEKLAHDLQFHEGNSDDTGDSSREQHGENNHSSPAELSRRVPRERPRDTSQRRWXXXXXXXXXXXXXXSFVLQRR
B9GN75______________STSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAPVACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCNKYIRLRERYNHESRC-TGLPDTTVESSRDVRAAERRQPQGP-----QRRQPQDFSRKRLLFTIAITGIAVLLGSFLFQKK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1049			88	11	0.923564
1050			11	88	0.923564
1055		22		77	0.999999
1093			11	88	0.923564
1134	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain