SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3666

Length: 1123 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3666

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor AtMYC2, putative (EC:1.3.1.74); K13422 transcription factor MYC2	-	-	53%
FL-Next	tr=JAMYC; Taxus cuspidata (Japanese yew).	-	-	72%
Blast2go	myc transcription factor	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	72%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B9VVN9

Fln msg: your sequence is shorter than subject: 288 - 660

Fln protein: EKMKRPVRNGNEDGSAVLCFSSEVAAASASASGTAVGASLPVNGAAGVRSSVDSEHSDIEASFKEAECSQAIVERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRSKVQDSESHKKDMQAQLEALKKELVARESGASGFSGSNFGLLKNPAADPSNLDVKGFGSKNQCPNIELEVRILGREAMVRVQCPKQNHPVARMMVAFKELELEVHHASISTVKELIFQTVILNMTGIVYTQEQLNAALLRKVADPGLR*

Protein Length: 289

Fln nts: GAGAAGATGAAGAGGCCTGTAAGGAATGGGAATGAAGATGGTAGCGCGGTTTTGTGTTTTTCGTCTGAAGTTGCTGCTGCTTCTGCTTCTGCTTCTGGTACTGCTGTTGGTGCGTCTTTGCCAGTGAACGGTGCTGCTGGGGTCAGATCTAGTGTTGATTCGGAGCATTCGGATATAGAGGCGTCTTTTAAAGAGGCCGAATGCAGTCAGGCCATTGTTGAAAGGAGGCCTCGGAAACGGGGCAGGAAGCCTGCCAATGGTAGAGAAGAACCTCTGAATCATGTAGAAGCTGAAAGGCAGAGGCGAGAGAAGTTGAACCAGAGGTTTTATGCACTCCGTGCTGTGGTTCCCAATGTGTCCAAGATGGATAAGGCCTCTCTGTTGGGTGATGCCATTTCTTACATTAATGAGCTCCGAAGCAAGGTGCAGGATTCTGAATCTCATAAAAAGGACATGCAGGCTCAACTTGAGGCCTTGAAGAAGGAATTGGTAGCCAGAGAATCGGGTGCTTCTGGATTTTCTGGCAGTAATTTTGGTTTACTAAAAAACCCGGCTGCTGATCCTTCGAACCTAGATGTCAAAGGCTTTGGTTCGAAAAATCAGTGTCCTAATATTGAGCTTGAAGTTCGAATCCTCGGTCGAGAGGCCATGGTCAGGGTTCAGTGTCCTAAGCAGAACCATCCTGTTGCAAGAATGATGGTTGCATTTAAAGAGCTTGAACTTGAAGTTCATCATGCCAGTATATCTACAGTGAAAGAGTTGATTTTTCAAACGGTTATTCTGAATATGACAGGTATTGTATATACGCAAGAACAGCTAAATGCTGCATTATTAAGGAAAGTAGCAGATCCTGGCCTTAGATAG___CATGCCATGAGCAATCTTGACTGGTATTTATCTAGAAAGCTGAAGTTCCCTTAGAAGCTTTAGGAACTTTGAGATCAGATTACTTTACCAGCCCAGAAGGAATTGTGCACTGTAAAATAATCCAACTTAATTTACTTTGTAAATTTTTTCACAAGTAATGAAGAACTGCTATAGCAGTTACTTGTAAGCATGGCTGCCCTGTTCCATAAAAATGAAATATGATGGAACCACAAAACCAATTAGTGAAAATGGTTCAATC

Fln Alignment:

sp_v1.1_unigene3666___VRSSVDSEHSDIEASFKEAECSQA-IVERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRSKVQDSESHKKDMQAQLEALKKELVAREXXXXXXXXXXXXLLKNPAADPSNLDVKGFGSKN-QCPNIELEVRILGREAMVRVQCPKQNHPVARMMVAFKELELEVHHASISTVKELIFQTVILNMT-GIVYTQEQLNAALLRKVADPGLR
B9VVN9______________MKSSVESEHSDIEASIKEPECSQATFVERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRVYALRAVVPNVSKMDKASLLGDAIAYINELRSKVVDAETHKKELQVQVEALKKELVVVRESGASGPNFGLIKDHYPTADSS--DVKGHGLNNSKCHGIELEVRLLGREAMIRVQSPKQNHPVARLMGALKELDLEVHHASVSAVKELMIQTVIVKMTGGIVYSQEQLNAALSKSVADSGLR

SSRs (tot: 1)

Start position	End position	Sequence	Length
77	97	CTGCTT CTGCTT CTGCTT CTG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain