SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3665

Length: 2090 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3665
GTTGAGCGAGGAAGTGATCAGGCTTCCGTCAGTGGAGTATCCGATTCTTCGTGCTCTGCTTCAGTATTTGTACACCGGGCGAACCCAGGTTTCAGAGTTCCAATTGGAGGCATTGAGTAAACTGAGTGAAGAGTTTGGTGTTCAGTCCTTGGTGGTCCAGTGTGAGCAAATGAAGGATGCACTCAAGGACACGTCTCTGAGGAAGGATCATAAACTGGAATTATTGCATTCCAGTCCTGTTACCTTCTTGCGGAACTGTCCAGCTTTCTCATCCGACATGCCGATTGATGTGCAAAAGCTGGAAAAATTGCTTGAAACTGGTGAATACAGTGACATCAATATTTATATTGAGGGGCATGGTCTGGTCGTCCAAGCACACAAACTCGTTTTGAGTGTCTGGAGTGCTCCTTTTGCCAAGATGTTTACAAATGGGATGAGTGAAAGCAATGCCTCAGAAGTCTGCTTGAGGGATGTTTCCCCTGAAGCATTTTTAGCTATGGTGCACTTCATGTACAGTGGGAAGTTGGATATGGATGAAAAACAGAACTTGGGTTCCTTGCTGCTCCCCCTTATTGTCCTAGCTGATCAGTTTGGAATTCACCTGCTTCAACAAGAATGCTGTGAATGCTTATTTGATTGTATCTCAAAGGATTCAGTAGGTCCAATCCTGCAGGTGGTCACCTCAATGCCTGCATGCAGGCCGCTTGAAGAAGCTTGTGAAGAAATGTTTTCTAAGCATTTTGATTATTGCACTACGGCCAGTGCAGAATTCAAAATGTTAGAAAGGGCCTCATTTATGAAAATACTTCAGCACCCCCATTTGGTAGTGACCTCTGAGGAAAGAGTTCTGGATGCTATTCTAACTTGGGGAACACAAGGAGATGGCCTTCATGGTTGGGAAGCAGTAAATCAGCAGCTAGAGGAGTGCAGTCCCGAGACACTCTTTGCAGAAAGGCTAGAACCTTTAAATGAATTGCTTGTTCTTGTTCGTTTTCCTCTAATGCCACTTCCTTCACTTCAAAAGCTGGAGCAGAGCAACCTAAGCAAGCAAATTCCAGTCTTTCGACAGCTGATAATGGAGGTGCTTCAGTATCTCGGGACAGATGCAAGCAATGCAGCAAATGAACAGAAGCACCTTTCGAAGTCATTTGGCATAAGCACTCAAGGGCAGCTAGGTAATTGTATCAGGTTCCATCCAAGACCATCGAGCTTTAAGAAACTCTTGTACATATGTGACGGTGATCATAATGGAGTAATTCATTATGCTGGCACTTCATATGGTGAACACCCATGGATGAATCCTGTGCTGGCAAAGAATATTTCTGTGACTGCAAGTAGCCCACTTTCACGGTACACTGACGCTAAAGTACTGGTCTCTAGGAGATACCAGGCTACCTCTTTTGCTGGACCTTGTATTGAGGATGGGAAGATATCTGCATGGTGGAAAGTTGACTTAGGGGAAGGCCACCAGCTTATGTGTAATTACTATACATTAAGACAGGATACCTCTATGGGTTACATGCGGTCATGGAGTTTGCAGGGATCATTGGATGGGGAACATTGGACAGACTTGAGAATACATAAGAATGATCAGAGTATTTGCAGGCCTGGGCAGTTTGCATCCTGGCCTATACACGGTGCCACTGCTTATCTTCCTTTCCAGTGTTTCAGAGTTGTACTGACAGGGCCCACTACGTGTCAGTCAAATCCATGGAATCTCTGCATTTGCTACATAGAATTATATGGCTATTTTAAGTGATTGTTGGGTTGCATCCCACTCATAATAACGTCAAGTCTTTTTGCGTTTGTAAAGCCTTTCGTAGACTATAATGTGTTCGGGCACTTATGCACGTGAATCCCATGCCATGTGTATTGAAGTAGTTGCGTTTTGTAGAAATTTGGTATATGTTCTAATCCGGAAACGTGCTGGAGCACACATGTGAGGAAGCATTGCATTTTTCTTCCGTGAAGTCTAATAAGGCCAACTTGATGGGTCATTATTTAGACACGCATCGTGTTATTTCTGAATGTTGCCATAAATTATTGAAATCAAGTTATTGTTTTGCTGGCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene3665

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ domain-containing protein [Arabidopsis thaliana] ref\|NP_850151.1\| BTB/POZ domain-containing protein [Arabidopsis thaliana] ref\|NP_001031447.1\| BTB/POZ domain-containing protein [Arabidopsis thaliana] ref\|NP_001031448.1\| BTB/POZ domain-containing p	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	btb poz domain-containing protein	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	69%
Blast2go	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	69%
Blast2go	Galactose-binding domain-like	IPR008979	-	69%
Blast2go	BTB/POZ fold	IPR011333	-	69%
Blast2go	BTB/Kelch-associated	IPR011705	-	69%
Blast2go	BTB/POZ	IPR013069	-	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LML1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 530 - 430

Fln protein: MKDALKDTSLRKDHKLELLHSSPVTFLRNCPAFSSDMPIDVQKLEKLLETGEYSDINIYIEGHGLVVQAHKLVLSVWSAPFAKMFTNGMSESNASEVCLRDVSPEAFLAMVHFMYSGKLDMDEKQNLGSLLLPLIVLADQFGIHLLQQECCECLFDCISKDSVGPILQVVTSMPACRPLEEACEEMFSKHFDYCTTASAEFKMLERASFMKILQHPHLVVTSEERVLDAILTWGTQGDGLHGWEAVNQQLEECSPETLFAERLEPLNELLVLVRFPLMPLPSLQKLEQSNLSKQIPVFRQLIMEVLQYLGTDASNAANEQKHLSKSFGISTQGQLGNCIRFHPRPSSFKKLLYICDGDHNGVIHYAGTSYGEHPWMNPVLAKNISVTASSPLSRYTDAKVLVSRRYQATSFAGPCIEDGKISAWWKVDLGEGHQLMCNYYTLRQDTSMGYMRSWSLQGSLDGEHWTDLRIHKNDQSICRPGQFASWPIHGATAYLPFQCFRVVLTGPTTCQSNPWNLCICYIELYGYFK*

Protein Length: 531

Fln nts: GTTGAGCGAGGAAGTGATCAGGCTTCCGTCAGTGGAGTATCCGATTCTTCGTGCTCTGCTTCAGTATTTGTACACCGGGCGAACCCAGGTTTCAGAGTTCCAATTGGAGGCATTGAGTAAACTGAGTGAAGAGTTTGGTGTTCAGTCCTTGGTGGTCCAGTGTGAGCAA_-_ATGAAGGATGCACTCAAGGACACGTCTCTGAGGAAGGATCATAAACTGGAATTATTGCATTCCAGTCCTGTTACCTTCTTGCGGAACTGTCCAGCTTTCTCATCCGACATGCCGATTGATGTGCAAAAGCTGGAAAAATTGCTTGAAACTGGTGAATACAGTGACATCAATATTTATATTGAGGGGCATGGTCTGGTCGTCCAAGCACACAAACTCGTTTTGAGTGTCTGGAGTGCTCCTTTTGCCAAGATGTTTACAAATGGGATGAGTGAAAGCAATGCCTCAGAAGTCTGCTTGAGGGATGTTTCCCCTGAAGCATTTTTAGCTATGGTGCACTTCATGTACAGTGGGAAGTTGGATATGGATGAAAAACAGAACTTGGGTTCCTTGCTGCTCCCCCTTATTGTCCTAGCTGATCAGTTTGGAATTCACCTGCTTCAACAAGAATGCTGTGAATGCTTATTTGATTGTATCTCAAAGGATTCAGTAGGTCCAATCCTGCAGGTGGTCACCTCAATGCCTGCATGCAGGCCGCTTGAAGAAGCTTGTGAAGAAATGTTTTCTAAGCATTTTGATTATTGCACTACGGCCAGTGCAGAATTCAAAATGTTAGAAAGGGCCTCATTTATGAAAATACTTCAGCACCCCCATTTGGTAGTGACCTCTGAGGAAAGAGTTCTGGATGCTATTCTAACTTGGGGAACACAAGGAGATGGCCTTCATGGTTGGGAAGCAGTAAATCAGCAGCTAGAGGAGTGCAGTCCCGAGACACTCTTTGCAGAAAGGCTAGAACCTTTAAATGAATTGCTTGTTCTTGTTCGTTTTCCTCTAATGCCACTTCCTTCACTTCAAAAGCTGGAGCAGAGCAACCTAAGCAAGCAAATTCCAGTCTTTCGACAGCTGATAATGGAGGTGCTTCAGTATCTCGGGACAGATGCAAGCAATGCAGCAAATGAACAGAAGCACCTTTCGAAGTCATTTGGCATAAGCACTCAAGGGCAGCTAGGTAATTGTATCAGGTTCCATCCAAGACCATCGAGCTTTAAGAAACTCTTGTACATATGTGACGGTGATCATAATGGAGTAATTCATTATGCTGGCACTTCATATGGTGAACACCCATGGATGAATCCTGTGCTGGCAAAGAATATTTCTGTGACTGCAAGTAGCCCACTTTCACGGTACACTGACGCTAAAGTACTGGTCTCTAGGAGATACCAGGCTACCTCTTTTGCTGGACCTTGTATTGAGGATGGGAAGATATCTGCATGGTGGAAAGTTGACTTAGGGGAAGGCCACCAGCTTATGTGTAATTACTATACATTAAGACAGGATACCTCTATGGGTTACATGCGGTCATGGAGTTTGCAGGGATCATTGGATGGGGAACATTGGACAGACTTGAGAATACATAAGAATGATCAGAGTATTTGCAGGCCTGGGCAGTTTGCATCCTGGCCTATACACGGTGCCACTGCTTATCTTCCTTTCCAGTGTTTCAGAGTTGTACTGACAGGGCCCACTACGTGTCAGTCAAATCCATGGAATCTCTGCATTTGCTACATAGAATTATATGGCTATTTTAAGTGATTGTTGGGTTGCATCCCACTCATAATAACGTCAAGTCTTTTTGCGTTTGTAAAGCCTTTCGTAGACTATAATGTGTTCGGGCACTTATGCACGTGAATCCCATGCCATGTGTATTGAAGTAGTTGCGTTTTGTAGAAATTTGGTATATGTTCTAATCCGGAAACGTGCTGGAGCACACATGTGAGGAAGCATTGCATTTTTCTTCCGTGAAGTCTAATAAGGCCAACTTGATGGGTCATTATTTAGACACGCATCGTGTTATTTCTGAATGTTGCCATAAATTATTGAAATCAAGTTATTGTTTTGCTGGCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene3665___VLSVWSAPFAKMFTNGMSESNASEVCLRDVSPE--AFLAMVHFMYSGKLDMDEKQNLGSLLLPLIVLADQFGIHLLQQECCECLFDC-ISKDSVGPILQVVTSM---PACRPLEEACEEMFSKHFDYCTTASAEFKMLERASFMKILQHPHLVVTSEERVLDAILTWGTQGDGLHGWEAVNQQLEECSPETLFAERLEPLNELL-VLVRFPLMPLPSLQKLEQSN
B8LML1______________ILAAKSPFFYKLFSNGMRESEQRDVTLRISASEEAALMELLNFMYSATV----TTNTASALLDVLMAADKFEVASCMRHCSRLLRNLPMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAKQFKDITKFQDDVMALPLAGVEAVLSSDELQVASEDAVYDFVLKWA---------RAHYPKME---------ERREILGSRLGRLIRFPNMSSRKLKKVLTCN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1149		85	14		0.993533
1151		14		85	0.993533
1160	85		14		0.993533
1161			85	14	0.993533
1267		12		87	0.992554
1800		5		84	0.999846

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain