SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3663

Length: 2123 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3663
CGTCGTGACCTTGGCTGTCACTCAATTTCATTTCAGGTCTGAACTGTCAGACCAGCGAGCTCTACAAAAGCTTCAGGTACTGTGAGGGAAAGGGCAGCTCGGCGCACCAAAGAGCGGCGAAATAATGGTGAGGAAGTTGCATTGGTGCAGAGCAATTGTTACTATCAGCTCGGCCGTTCTTTTATGTACATTTTGAGCCGTTTTACGATCAATTTCGCCAGCTCTTACGATCAATCCGCTGAGCAGGCTGGTTTAGAATCGGGGCGCCATGAGAAAGAAGGATCTTAAGAAGTTGAAGCTCGCGGTTCCCGCACCGGAAACCCCTATGTCTGACTTCTTGACTGCAAGTGGTACATTTCAGGATGGTGATCTCCTTCTAAATAGGCAAGGTTTACGGCTTATTTCCCAAGAAAATGTTGAGAGTCCATCTCCAATAGAGCCACTTGATAACCAGTTTACTCTGGCTGACCTAGAGACTGTGAGTGTCATTGGAAAAGGAAGTGGTGGTGTTGTTCAACTGGTTCGTCATAAATGGACAGGGCAGTTTTTTGCTTTAAAGGCCATTCAAATGAGCATTCAAGAGAGTGTTCGTAAACAAATTGTGCAAGAGTTGAAAATAAATCAAGCTTCACAGTGCCCAAATGTTGTAGTTTGTTACCATGCTTTCTATAACAATGGTGTTATCTCTATAGTTTTGGAGTACATGGATTGTGGCTCTCTTGCAGATGTGATAAAAAAAGTCAAAACATTTACAGAGCCTTATCTTGCAGTTATTTGCAAGCAGGTTCTCAAGGGATTGATATACTTGCATCGCGATAGACATATCATCCATAGAGATATCAAACCATCAAACTTGCTAGTCAATCACAAAGGTGAAGTGAAGATCACAGACTTTGGTGTTAGTGCAACGCTAGCAAATTCAATGGGCCAACGCGATACCTTCGTTGGTACCTACAATTATATGTCGCCAGAGCGGATAAGTGGAAGCACATATGGATTTAGCAGTGATATTTGGAGCTTGGGCCTGGTTGTGTTGGAGTGTGCTACTGGTCGTTTCACATACTTACCTCCTGGACAAGAAGAAGGGTGGCTCAATTTTTATGAGCTTCTGGAGACAATTGTTGAGCAACCAGCACCTTGTGCATCGCCAGATCAGTTTTCACCAGAATTTTGCTCCTTCATCTCTGCATGTGTTCAAAAGGATCCGAAAGACAGAATGTCGGCCACAGATCTTTTGAATCATGCCTTTATCAGGAAATATGAAGACCAAAATGTTGATCTCGCAGCTTTGCTCAACAGCTTGTCATCACCTGTGTAATCATAATAGACATTCAAGTGATGACACCCTATGGTAAAACAATGGTTTCCAGATTCCATGATTGGAATTTAGTTCTGTATAAGTCATAGCTTATCTCAAACTGTGTAAATGAGTAAAACCAAATGGGCATTAATATATGCTAGAATTAAGCTGTTGATGTAGTATTGCTTAACTGGCAATGGGGAGTGAATCTCCACTCAATTATGTGATGTCCTTTATTTAAGAAACCCTAATCATAAAACATCTGTCGTGCTCTATTTAGTCTAAAATATGGTTCCATGACTATTATATCCATTTAGAGGTGAATAAACTTGACAGTCTGTGAGGGATTTTTTGAGCCTTGGCAGATATTTGATTGTTAAGTTTAGACAAATCCGTCGGCTTTGTTTCGAAAGAAACCATGCTGATCCAAATTCCAGCGTGCAACTTCAATATTTATCATTGTTGGGTCCCAATCCTGGCACTCTAGTTTGATAATTTATCTAATGTTCTGCCAAGACTAAGTTTAGTTTGAGCTTTGTTTGGACGTTGAACCAATGGGGCTGTGCTTTGTTAGTGTGATGTTTAATGTAAGCACATACTGGCATGGAAGATTATGCCAGCTTCTGAGTGTTGCTCGAGTTCAAGTGGATAAAAAGCATACATGGTATACAGTGTCAGCATGTGTTAAATTCTATCGTAGTTATCTTTTTTCAATAGACGAATCGGGTCCATCGGCTGCTGTTGGGGAAGCCCAGCTATCAAGGTTTATCAAGGGTTTCAGTGTTCCACTGCCTCACTGCAAGCAACAATGGGATTATATTGG

Ace file of the UniGene sp_v1.1_unigene3663

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MAP kinase n=1 Tax=Selaginella moellendorffii RepID=D8SYB3_SELML	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	map kinase	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	0.0	85%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	85%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	85%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	85%
Blast2go	Protein kinase-like domain	IPR011009	-	85%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	85%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	85%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P4

Fln msg:

Fln protein: MRKKDLKKLKLAVPAPETPMSDFLTASGTFQDGDLLLNRQGLRLISQENVESPSPIEPLDNQFTLADLETVSVIGKGSGGVVQLVRHKWTGQFFALKAIQMSIQESVRKQIVQELKINQASQCPNVVVCYHAFYNNGVISIVLEYMDCGSLADVIKKVKTFTEPYLAVICKQVLKGLIYLHRDRHIIHRDIKPSNLLVNHKGEVKITDFGVSATLANSMGQRDTFVGTYNYMSPERISGSTYGFSSDIWSLGLVVLECATGRFTYLPPGQEEGWLNFYELLETIVEQPAPCASPDQFSPEFCSFISACVQKDPKDRMSATDLLNHAFIRKYEDQNVDLAALLNSLSSPV*

Protein Length: 351

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCATTTCAGGTCTGAACTGTCAGACCAGCGAGCTCTACAAAAGCTTCAGGTACTGTGAGGGAAAGGGCAGCTCGGCGCACCAAAGAGCGGCGAAATAATGGTGAGGAAGTTGCATTGGTGCAGAGCAATTGTTACTATCAGCTCGGCCGTTCTTTTATGTACATTTTGAGCCGTTTTACGATCAATTTCGCCAGCTCTTACGATCAATCCGCTGAGCAGGCTGGTTTAGAATCGGGGCGCC_-_ATGAGAAAGAAGGATCTTAAGAAGTTGAAGCTCGCGGTTCCCGCACCGGAAACCCCTATGTCTGACTTCTTGACTGCAAGTGGTACATTTCAGGATGGTGATCTCCTTCTAAATAGGCAAGGTTTACGGCTTATTTCCCAAGAAAATGTTGAGAGTCCATCTCCAATAGAGCCACTTGATAACCAGTTTACTCTGGCTGACCTAGAGACTGTGAGTGTCATTGGAAAAGGAAGTGGTGGTGTTGTTCAACTGGTTCGTCATAAATGGACAGGGCAGTTTTTTGCTTTAAAGGCCATTCAAATGAGCATTCAAGAGAGTGTTCGTAAACAAATTGTGCAAGAGTTGAAAATAAATCAAGCTTCACAGTGCCCAAATGTTGTAGTTTGTTACCATGCTTTCTATAACAATGGTGTTATCTCTATAGTTTTGGAGTACATGGATTGTGGCTCTCTTGCAGATGTGATAAAAAAAGTCAAAACATTTACAGAGCCTTATCTTGCAGTTATTTGCAAGCAGGTTCTCAAGGGATTGATATACTTGCATCGCGATAGACATATCATCCATAGAGATATCAAACCATCAAACTTGCTAGTCAATCACAAAGGTGAAGTGAAGATCACAGACTTTGGTGTTAGTGCAACGCTAGCAAATTCAATGGGCCAACGCGATACCTTCGTTGGTACCTACAATTATATGTCGCCAGAGCGGATAAGTGGAAGCACATATGGATTTAGCAGTGATATTTGGAGCTTGGGCCTGGTTGTGTTGGAGTGTGCTACTGGTCGTTTCACATACTTACCTCCTGGACAAGAAGAAGGGTGGCTCAATTTTTATGAGCTTCTGGAGACAATTGTTGAGCAACCAGCACCTTGTGCATCGCCAGATCAGTTTTCACCAGAATTTTGCTCCTTCATCTCTGCATGTGTTCAAAAGGATCCGAAAGACAGAATGTCGGCCACAGATCTTTTGAATCATGCCTTTATCAGGAAATATGAAGACCAAAATGTTGATCTCGCAGCTTTGCTCAACAGCTTGTCATCACCTGTGTAA___TCATAATAGACATTCAAGTGATGACACCCTATGGTAAAACAATGGTTTCCAGATTCCATGATTGGAATTTAGTTCTGTATAAGTCATAGCTTATCTCAAACTGTGTAAATGAGTAAAACCAAATGGGCATTAATATATGCTAGAATTAAGCTGTTGATGTAGTATTGCTTAACTGGCAATGGGGAGTGAATCTCCACTCAATTATGTGATGTCCTTTATTTAAGAAACCCTAATCATAAAACATCTGTCGTGCTCTATTTAGTCTAAAATATGGTTCCATGACTATTATATCCATTTAGAGGTGAATAAACTTGACAGTCTGTGAGGGATTTTTTGAGCCTTGGCAGATATTTGATTGTTAAGTTTAGACAAATCCGTCGGCTTTGTTTCGAAAGAAACCATGCTGATCCAAATTCCAGCGTGCAACTTCAATATTTATCATTGTTGGGTCCCAATCCTGGCACTCTAGTTTGATAATTTATCTAATGTTCTGCCAAGACTAAGTTTAGTTTGAGCTTTGTTTGGACGTTGAACCAATGGGGCTGTGCTTTGTTAGTGTGATGTTTAATGTAAGCACATACTGGCATGGAAGATTATGCCAGCTTCTGAGTGTTGCTCGAGTTCAAGTGGATAAAAAGCATACATGGTATACAGTGTCAGCATGTGTTAAATTCTATCGTAGTTATCTTTTTTCAATAGACGAATCGGGTCCATCGGCTGCTGTTGGGGAAGCCCAGCTATCAAGGTTTATCAAGGGTTTCAGTGTTCCACTGCCTCACTGCAAGCAACAATGGGATTATATTGG

Fln Alignment:

sp_v1.1_unigene3663___MRKKDLKKLKLAVPAPETPMSDFLTASGTFQDGDLLLNRQGLRLISQENVESPSPIEPLDNQFTLADLETXXXXXXXXXXXXQLVRHKWTGQFFALKAIQMSIQESVRKQIVQELKINQASQCPNVVVCYHAFYNNGVISIVLEYMDCGSLADVIKKVKTFTEPYLAVICKQVLKGLIYLHRDRHIIHRDIKPSNLLVNHKGEVKITDFGVSATLANSMGQRDTFVGTYNYMSPERISGSTYGFSSDIWSLGLVVLECATGRFTYLPPGQEEGWLNFYELLETIVEQPAPCASPDQFSPEFCSFISACVQKDPKDRMSATDLLNHAFIRKYEDQNVD
D5A9P4______________MRKKDLKKLKLAVPAPETPMSDFLTASGTFQDGDLLLNRQGLRLISQENDESPPPIEPLDNQFTLADLETVSVIGKGSGGVVQLVRHKWTGQFFALKAIQMSIQESVRKQIVQELKINQASQCPNVVVCYHAFYNNGVISIVLEYMDCGSLADVIKRVKTFTEPYLAVICKQVLKGLIYLHRDRHIIHRDIKPSNLLVNHKGEVKITDFGVSATLANSMGQRDTFVGTYNYMSPERISGSTYGFSSDIWSLGLVVLECATGRFTYLPPGQEEGWLNFYELLETIVEQPAPCASPDQFSPEFCSFISACVQKDPKDRMSATDLLNHPFIKRYEDQNVD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1839		12		87	0.992554
1842		12		87	0.992554
1843			12	87	0.992554
1844			87	12	0.992554
1848		12	87		0.992554
1852	87		12		0.992554
1853	87	12			0.992554
1854		87		12	0.992554
1857	87	12			0.992554
1859		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain