SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3660

Length: 1937 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3660 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translation initiation factor eif-2b alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9T3Y5_RICCO	-	-	71%
FL-Next	sp=Methylthioribose-1-phosphate isomerase; Vitis vinifera (Grape).	-	-	28%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Initiation factor 2B-related	IPR000649	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: D7TCD0

Fln msg: your sequence is shorter than subject: 350 - 376

Fln protein: MEETSDVTQLRPPSVTSDWLAQAKAAIPNPNLDDVPSNCHPLPPDAPSFSVIDEFNNWSSNPELAEAVAAIKALTAVIKRSQATTMMELEIELKKASDSLKAWDETSISLSAGCDLFTRYVTRTSALEYEDFSAGKSRLIERGERFGEISFKARKTIAMLGQDFLQDGSTILVHGFSRVVLALLRMAASNGKHFSVVCTEGRPDNRGIEMSKELVAVGVPIKLILDSAVAYTMEKIDMVLFGADGVVESGGIINMIGTYQVALVAHSMNKPVYVAAESYKFARLYPLDQRDMSPVPCKNINFEVPVPKSVEVESSARDYTPPQYLTLLFTDLGVLTPSAVSDELIQLYL*

Protein Length: 351

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGATGTCCGAGTCTGATAATATTTACAACACCATTACGTCGTGACCTTGGCTGTCACTCAATCCTTCATCTTAGAGCAAAGGGAGCAGAATAAAGCGAATGGTCTGAGCCGA_-_ATGGAGGAGACCAGTGATGTAACTCAGCTTCGACCACCATCCGTGACGTCCGACTGGCTTGCACAGGCCAAGGCAGCCATTCCCAATCCAAATCTCGACGATGTTCCTTCAAACTGCCACCCACTCCCTCCCGATGCTCCGTCCTTCAGCGTCATCGACGAGTTCAACAATTGGAGCAGCAACCCAGAACTGGCCGAGGCCGTGGCGGCCATAAAAGCTCTGACGGCCGTCATTAAGCGGAGCCAGGCCACTACCATGATGGAACTAGAAATCGAACTCAAGAAGGCATCGGATTCTCTCAAGGCATGGGATGAGACGTCTATTTCACTGTCTGCTGGGTGTGACCTTTTCACAAGATATGTTACTAGGACATCTGCTTTGGAGTATGAGGATTTTTCAGCTGGCAAGTCCCGGCTGATAGAACGTGGTGAAAGGTTTGGAGAAATATCTTTTAAGGCTCGTAAAACTATTGCAATGCTTGGGCAAGATTTTCTACAGGATGGTAGTACCATCCTGGTTCATGGTTTTTCAAGAGTTGTCTTAGCACTTTTGAGAATGGCAGCATCAAATGGGAAGCACTTTAGTGTTGTATGCACTGAAGGCCGTCCAGATAATAGAGGCATAGAAATGTCAAAGGAACTGGTTGCTGTTGGTGTTCCTATTAAACTTATATTGGACTCAGCAGTGGCTTATACCATGGAAAAGATTGATATGGTACTTTTTGGTGCGGATGGAGTCGTTGAGAGTGGAGGTATTATCAATATGATTGGAACATATCAAGTCGCATTAGTGGCCCACAGCATGAATAAGCCTGTATATGTAGCAGCTGAGAGTTACAAGTTTGCTAGGCTCTATCCTCTCGACCAAAGGGACATGTCCCCAGTACCATGTAAGAATATTAACTTTGAAGTTCCAGTGCCTAAATCAGTTGAAGTGGAATCTTCTGCTAGGGATTACACCCCTCCACAATATCTTACACTCTTGTTCACAGACTTGGGTGTTCTAACACCGTCTGCAGTCAGTGATGAGTTAATTCAGTTGTATCTATAA___TAATTTATGGTTCATCTTTTTTCTTCTGGAAGCCTTGATTGTAAAAACTATCTTTGCTTCATTTATCTGCAGGCCTTGTTGAATGGTTACAGAAAAATATTTCTAGGCATTTTCCATCCCTTGCCTTTCCACTCACCCTTAACCTCCTTTTTTCCCTAATCGGCACACTTCTTCAGTGTTAGAGAATACTAATTTATAATTGCAAAGGAAGTTGAATAGCAGAGGATGCAAAATGAAACTCTGCTCATTCTTTTTTCATGACCATTGTTTATCTGAAAGTAATCATGTTTGTAGTAATGCCAAGGATGATGAAAATAGCTAAGTAGATTAGGTGATCATCTTATATTTAGTACTTCCCTTTTACTAGTTAGCTGCGGGAAATTATTATCATTATCTGGAGATTGAGACACCCTTATGGGATGGAAAAAACATTGAACTACTACTATGCTTTTGGTCCTCTTCAGTGCTGTCTGACGACGTTTCCTTTGAATCCACCTGTTCTTTCACATATCCTTTTCTGAGAAGAAAATAATGAGCTGCAAAGCGCATGCAACACTGGTATTCTCTATCGCCTTTTAATGGGATGAATATTGAATCACTTATTCTTTTTGGTAATTTATAATTAATTGTGTAAAATTACTTTTGGCTGGAAATTCTCTAGATACTCGGCCTTATTTGGTTCAGTTGTAAAGGATGTACACAATAAAGCATTATATTAATTTTTAATTTTCTCCCTTTTATGCAAGTAC

Fln Alignment:

sp_v1.1_unigene3660___AEAVAAIKALTAVIKRSQATTMMELEIE----LKKASDSLKAWDETSISLSAGCDLFTRYVTRTSALEYEDFSAGKSRLIERGERFGEISFKARKTIAMLGQDFLQD------GSTILVH---------GFSRVVLALLRMAASNGKHFSVVCTEGRPDNRGIEMSK-ELVAVGVPIKLILDSAVAYTME--KIDMVLFGADGVVESGGIINMIGTYQVALVAHSMNKPVYVAA
D7TCD0______________APAIAIAAALSLAVEVSNLEDFIGTSDDAASFLNSKLDYLVTSRPTAVNLSDAVTKLKGVISNAAATAFEAMSVFQA-FLEAAEDMLREDVAANRAIGLYGASFLQSHIKDSKNLSILTHCNTGSLATAGYG-TALGVIRSVHAEGILLRAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMQAGRVDAVIVGADRVAANGDTANKIGTYSLALSAKHHHIPFFVAA

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
320			87	12	0.992554
375			88	11	0.923564
376		88	11		0.923564
381	88		11		0.923564
388	88	11			0.923564
389	88	11			0.923564
394			88	11	0.923564
395	88	11			0.923564
397		11	88		0.923564
398			12	87	0.992554
623	88	11			0.999952
626	5	11	82		0.999919
632			87	12	0.999964
633	87	12			0.999964
634	12	6		81	0.999943
635	6	12	81		0.999943
638	81	18			1.0
639	87		12		0.999964
675			84	15	0.999986
677	15	84			0.999986
678		84	15		0.999986
684	84	15			0.999986
685		15		84	0.999986
688	76		15	7	0.999983
690		15	84		0.999986
692	61	15		23	1.0
697	61		38		1.0
698	72	27			1.0
699		27	72		1.0
701	27			72	1.0
702	72		27		1.0
705		27		72	1.0
706	27			72	1.0
707		27		72	1.0
708			27	72	1.0
711	72		27		1.0
740	85		14		0.993533
741		71		28	1.0
742		71	28		1.0
744		14	14	71	0.984337
745	85			14	0.993533
746	71		28		1.0
747	85	14			0.993533
748		14		71	0.984337
749	14	14		71	0.984337
751			28	71	1.0
752		14	14	71	0.984337
753	71	14		14	0.984337
754	14	14		71	0.984337
757	85		14		0.993533
758		14		85	0.993533
761	83		16		0.994512
764			16	66	0.988813
1278		80		20	0.995493
1539		28		71	1.0
1568			71	28	1.0
1690		90		10	0.90298
1720		11		88	0.923564
1846	83	16			0.999991
1847	83	16			0.999991
1848		16	83		0.999991
1853	90			10	0.90298
1855	10		90		0.90298
1857		10		90	0.90298
1858		20	20	60	0.99255
1859		40	60		1.0
1864		25	75		0.996473
1865	75			25	0.996473
1867	75	25			0.996473
1868	25		75		0.996473
1870	25	75			0.996473
1871	75			25	0.996473
1872	75		25		0.996473
1877		75		25	0.996473
1878	75			25	0.996473
1880			75	25	0.996473
1882		75		25	0.996473
1883			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain