SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3657

Length: 2223 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3657
ATGGGGAGAGACCGAAGACCACCGCCCATCCAAAGCGGTTTCCGTCACTGATTGGAAATTCAAAATTAGGCGGGCTCTTGAATCCGCACTCAAAATGGGAGGGAAGTTTTGGGATAACAGCCATCACTAACCAGGTATTGTTTGGATCCGTGACCTAAAGATCCTCTATCTCTTCCCCTATTTGTTCCTCGCCACAGTACGTTATTTCGGCGAAATTCAGATGATCGCTCTCAACTATTACAGTGACCGCCATTACTGTCTGCTGCTCCTGTGAATGACAAAAGGTTCTTGATGTCAAGAAGTTAAGAAGTCGTGGAAACGGATTACGCGTTAATGCTGTTTACAAGGAAGGATTGCTAGTGCTCTGTCTGTTAGCGGATCCTGTTTTTGGTGGGGAGATTAAAGATGGCGGGGGGACAGGAAAATTGCCTCCGTATTACTCGAGCTCGAGCTGCCTGTGTTTCGAAAGCTTCTGCCCCTGTGATTCAATCGCAAGTAGATGAGAAGAAAACCAGGAAAAGAGCTCCTAAGCGAGCTGCAGTGGATGATCTTGCTGCCAATGCAAGCGCTTCTCAGCCTAAAAGGCGCGCAGTTTTAGGCGATGTCACAAATCTTCATGCTGCTGCTACCGATTGCTTGTCAACAGCGAAAGACCAGGTTAATGCTCCCAATCCTAGCATTAAAGGGAGGGCGCGTAACAAGAAGAAAGAGGCAAGGACTTCAACGAAAATAGTTAAAGATGAAATTCATCCGGAATCGAATCCTCTTGCTGATGATAGTTCGAATCATTCGGAATGTCAAAAGCCTCCCGCTGCAAAATTAGCAGAGCAACGATCATTAAAAGGCGTACCTTCAAAGGCAAAGCAGGGGGGAAGCTCCAATTCACAAAGCTGTTCGAAGCACACAGACATAGACAAAGACCACACAGATCCTCAAATGTGTACTAGTTATGTCGAAGATATTTACGAGTATTTACGAAATGCAGAGTTGAAGAATAGGCCTTCGGCAAATTTCATGGAGACTGTACAGAATGATATCACGCCAAATATGCGAGGAATTCTCGTTGATTGGCTGGTAGAGGTTAGCGAGGAGTATAAGCTTGTCCCTGACACACTATACTTGACAGTATCTTACATTGATCGTTATCTGTCCGCAAATCCAACTAGTAGGCACAAACTGCAACTTCTGGGAGTCTCTTGCATGCTAATTGCATCGAAATACGAGGAAGTCTGCCCTCCTCATGTGGAAGAATTCTGTTATATCACAGATAATACATACACAAGAGACGAGATGTTGTCAATGGAGAGAAAAATTTTAATCTTCTTGAACTTTGAGATGACAAAGCCTACAACAAAGAGTTTTCTCAGGCGTTTTGTACGAGCTTCTCAAGCAGGGAATAAGGCCCCGAGTTTGCATATGGAGTTTTTAGCCAATTATTTGGCAGAGTTGACACTCATGGAATGCAGTTTTCTCCAGTACCTACCATCCTTGATAGCAGCCTCAACTGTATTTCTGTCTCGATTGACACTTGATTTTCTAACAAATCCATGGAATCCAACTTTGGCGCATTATACAGGATACAAGGCATCACAGCTGAAGGACTGTGTAATGGCAATCTATAATGTACAAATGAATCGAAAAGGTAGTACATTGGTTGCAATAAGGGAAAAATATCAACAACACAAGTTCAAATGTGTAGCAAGCTTGCCTCCACCTCCTTTTATTGCTGAAAGGTTCTTTGAAGACGCCCCAAACTAAAGCAATCCATCATTGCTTGTGCACAAGCGTTTTGCTGAATCTTGTTTGGAAGTACAATCTCATGTAATAGTTGTAATTGAATCCGGAGTCTTTTACTTATTGTTGGTTAATTTCCATTTAAATGTGTCAATTTGTCCAGACCGTCAGTGCCCATTCTTTTGGTGCTCATATTTTAACCCAGCGACTTACCAGCCTAGTAAGCAATGGGGAGCTTACATGTATTAGTTTTGAGCACTTAAAGGAAGTGCCCATTTATCAAATTGTATCATATTTTTTGGAAATTATCTACGTGGAAACAGACGAGCCCATGTGGTCATGGAGTATTGATAACATGATTTTGTACAGGGAATAGTCGTCAAGGGTTTTTTGTGTGTGGTTATTTAGATCTTGTAAACGTCAGAAACTTTATCATGTCATCATGGGATTAGAATTTAGATATTTATCATGTGATCATAAGACTAATTT

Ace file of the UniGene sp_v1.1_unigene3657

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[D] COG5024 Cyclin	-	-	2.8026e-45	32%
FL-Next	Isoform 2 of Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3	-	-	0.0	60%
Blast2go	protein	-	-	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin, C-terminal	IPR004367	-	73%
Blast2go	Cyclin, N-terminal	IPR006671	-	73%
Blast2go	Cyclin-like	IPR013763	-	73%
Blast2go	Cyclin A/B/D/E	IPR014400	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0INT0-2

Fln msg: your sequence is longer than subject: 451 - 345

Fln protein: MAGGQENCLRITRARAACVSKASAPVIQSQVDEKKTRKRAPKRAAVDDLAANASASQPKRRAVLGDVTNLHAAATDCLSTAKDQVNAPNPSIKGRARNKKKEARTSTKIVKDEIHPESNPLADDSSNHSECQKPPAAKLAEQRSLKGVPSKAKQGGSSNSQSCSKHTDIDKDHTDPQMCTSYVEDIYEYLRNAELKNRPSANFMETVQNDITPNMRGILVDWLVEVSEEYKLVPDTLYLTVSYIDRYLSANPTSRHKLQLLGVSCMLIASKYEEVCPPHVEEFCYITDNTYTRDEMLSMERKILIFLNFEMTKPTTKSFLRRFVRASQAGNKAPSLHMEFLANYLAELTLMECSFLQYLPSLIAASTVFLSRLTLDFLTNPWNPTLAHYTGYKASQLKDCVMAIYNVQMNRKGSTLVAIREKYQQHKFKCVASLPPPPFIAERFFEDAPN*

Protein Length: 452

Fln nts: ATGGGGAGAGACCGAAGACCACCGCCCATCCAAAGCGGTTTCCGTCACTGATTGGAAATTCAAAATTAGGCGGGCTCTTGAATCCGCACTCAAAATGGGAGGGAAGTTTTGGGATAACAGCCATCACTAACCAGGTATTGTTTGGATCCGTGACCTAAAGATCCTCTATCTCTTCCCCTATTTGTTCCTCGCCACAGTACGTTATTTCGGCGAAATTCAGATGATCGCTCTCAACTATTACAGTGACCGCCATTACTGTCTGCTGCTCCTGTGAATGACAAAAGGTTCTTGATGTCAAGAAGTTAAGAAGTCGTGGAAACGGATTACGCGTTAATGCTGTTTACAAGGAAGGATTGCTAGTGCTCTGTCTGTTAGCGGATCCTGTTTTTGGTGGGGAGATTAAAG_-_ATGGCGGGGGGACAGGAAAATTGCCTCCGTATTACTCGAGCTCGAGCTGCCTGTGTTTCGAAAGCTTCTGCCCCTGTGATTCAATCGCAAGTAGATGAGAAGAAAACCAGGAAAAGAGCTCCTAAGCGAGCTGCAGTGGATGATCTTGCTGCCAATGCAAGCGCTTCTCAGCCTAAAAGGCGCGCAGTTTTAGGCGATGTCACAAATCTTCATGCTGCTGCTACCGATTGCTTGTCAACAGCGAAAGACCAGGTTAATGCTCCCAATCCTAGCATTAAAGGGAGGGCGCGTAACAAGAAGAAAGAGGCAAGGACTTCAACGAAAATAGTTAAAGATGAAATTCATCCGGAATCGAATCCTCTTGCTGATGATAGTTCGAATCATTCGGAATGTCAAAAGCCTCCCGCTGCAAAATTAGCAGAGCAACGATCATTAAAAGGCGTACCTTCAAAGGCAAAGCAGGGGGGAAGCTCCAATTCACAAAGCTGTTCGAAGCACACAGACATAGACAAAGACCACACAGATCCTCAAATGTGTACTAGTTATGTCGAAGATATTTACGAGTATTTACGAAATGCAGAGTTGAAGAATAGGCCTTCGGCAAATTTCATGGAGACTGTACAGAATGATATCACGCCAAATATGCGAGGAATTCTCGTTGATTGGCTGGTAGAGGTTAGCGAGGAGTATAAGCTTGTCCCTGACACACTATACTTGACAGTATCTTACATTGATCGTTATCTGTCCGCAAATCCAACTAGTAGGCACAAACTGCAACTTCTGGGAGTCTCTTGCATGCTAATTGCATCGAAATACGAGGAAGTCTGCCCTCCTCATGTGGAAGAATTCTGTTATATCACAGATAATACATACACAAGAGACGAGATGTTGTCAATGGAGAGAAAAATTTTAATCTTCTTGAACTTTGAGATGACAAAGCCTACAACAAAGAGTTTTCTCAGGCGTTTTGTACGAGCTTCTCAAGCAGGGAATAAGGCCCCGAGTTTGCATATGGAGTTTTTAGCCAATTATTTGGCAGAGTTGACACTCATGGAATGCAGTTTTCTCCAGTACCTACCATCCTTGATAGCAGCCTCAACTGTATTTCTGTCTCGATTGACACTTGATTTTCTAACAAATCCATGGAATCCAACTTTGGCGCATTATACAGGATACAAGGCATCACAGCTGAAGGACTGTGTAATGGCAATCTATAATGTACAAATGAATCGAAAAGGTAGTACATTGGTTGCAATAAGGGAAAAATATCAACAACACAAGTTCAAATGTGTAGCAAGCTTGCCTCCACCTCCTTTTATTGCTGAAAGGTTCTTTGAAGACGCCCCAAACTAA___AGCAATCCATCATTGCTTGTGCACAAGCGTTTTGCTGAATCTTGTTTGGAAGTACAATCTCATGTAATAGTTGTAATTGAATCCGGAGTCTTTTACTTATTGTTGGTTAATTTCCATTTAAATGTGTCAATTTGTCCAGACCGTCAGTGCCCATTCTTTTGGTGCTCATATTTTAACCCAGCGACTTACCAGCCTAGTAAGCAATGGGGAGCTTACATGTATTAGTTTTGAGCACTTAAAGGAAGTGCCCATTTATCAAATTGTATCATATTTTTTGGAAATTATCTACGTGGAAACAGACGAGCCCATGTGGTCATGGAGTATTGATAACATGATTTTGTACAGGGAATAGTCGTCAAGGGTTTTTTGTGTGTGGTTATTTAGATCTTGTAAACGTCAGAAACTTTATCATGTCATCATGGGATTAGAATTTAGATATTTATCATGTGATCATAAGACTAATTT

Fln Alignment:

sp_v1.1_unigene3657___DIDKDHTDPQMCTSYVEDIYEYLRNAELKNRPSANFMETVQNDITPNMRGILVDWLVEVSEEYKLVPDTLYLTVSYIDRYLSANPTSRHKLQLLGVSCMLIASKYEEVCPPHVEEFCYITDNTYTRDEMLSMERKILIFLNFEMTKPTTKSFLRRFVRASQAGNKAPSLHMEFLANYLAELTLMECSFLQYLPSLIAASTVFLSRLTLDFLTNPWNPTLAHYTGYKASQLKDCVMAIYNVQMNRKGSTLVAIREKYQQHKFKCVASLPPPPFIAERFFEDA
Q0INT0-2____________DVDNNYEDPQLCATLASDIYMHLREAETRKHPSTDFMETLQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQRLQLLGVACMLIAAKYKEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEMTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQYKSSELSDCVKALHRLFCVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFRDS

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
1279	88		11		0.923564
1280	88		11		0.923564
1281			11	88	0.923564
1322	25			75	0.996473
1326	75			25	0.996473
1363	83		16		0.994512
1404	20		80		0.995493
1421		20		80	0.995493
1426	80		20		0.995493
1433			20	80	0.995493
1434	20			80	0.995493
1435		20		80	0.995493
1436	20			80	0.995493
1437	80		20		0.995493
1519		18		81	0.999994
1520			18	81	0.999994
1525		18		81	0.999994
1528		80		20	0.999996
1530	80		20		0.999996
1531		20		80	0.999996
1534	77			22	0.999999
1540		22	77		0.999999
1553	88		11		0.923564
1611	12	87			0.992554
1702		18		81	1.0
1708		18	81		1.0
1710	81			18	1.0
1711	81		18		1.0
1716	6	12	81		0.999943
1717	12	87			0.999964
1727		80	20		1.0
1729			20	80	1.0
1730	20			80	1.0
1731		20		80	1.0
1732	80	20			1.0
1740	80	15		5	1.0
1741	80	5		15	1.0
1742	5	15	80		1.0
1743	15		85		1.0
1791		84		15	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain