SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3646

Length: 1221 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3646

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	2.0e-18	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	unknown [Picea sitchensis]	-	-	3.84438e-18	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACD7

Fln msg: your sequence is longer than subject: 318 - 50

Fln protein: MSKQGIIFSGSAIRPSNVESSQIISSSYMLYPSAIPDREALLLKNAMSTEVDTRWINSAQKVDQLVVQENVVLNKLKKSVQNLEGVQLPDASLKPITQISLIVDSLLDYVNKVQKNALNSMVMSETLKKHIIEEHDDLKQFMTLFQQQKVSANHAAAVLNKWTEYCSDEMKEIEIKRMSIRDTLDEYARESNEQQKAILKQTLDLHYKELDEHIIKEREWCYEGRNLAQRIEDPKKLMGNAENLLAKTSCKVHQFFESTSVTNMDVAMDVLFDIRSMKQCAKYAVDIWYNFKEAMQVGAKNVYEVCLRDVPTVPTLS*

Protein Length: 319

Fln nts: ATTGGGGTTTGACCCGGCAAAGTCTCCATCGCTTAGACAAGAAGGTAGTCAATATTCAGAATCTATTACTTCTCAGTCTTTGCATCCACCATCTAGTTCTGTT_-_ATGTCAAAACAAGGCATCATATTTTCTGGATCAGCCATCAGACCTTCAAATGTCGAATCATCGCAAATAATTTCAAGTTCTTACATGCTATATCCTTCTGCGATTCCAGACAGAGAGGCCCTCCTCCTGAAAAATGCTATGAGCACTGAGGTTGATACAAGGTGGATAAATTCAGCACAGAAAGTCGATCAGTTAGTGGTCCAGGAGAATGTTGTATTGAACAAGCTCAAGAAGTCTGTACAGAATTTGGAAGGAGTGCAGTTACCGGATGCTTCACTTAAGCCAATCACACAGATATCTTTGATTGTGGATTCACTTTTGGACTATGTGAACAAGGTCCAGAAGAATGCTCTAAATTCAATGGTTATGTCTGAAACCTTGAAGAAACATATCATTGAGGAGCACGATGACCTGAAGCAGTTCATGACTCTATTTCAACAACAGAAAGTGAGTGCCAATCATGCAGCAGCGGTGCTCAACAAGTGGACAGAATATTGCAGTGATGAAATGAAAGAGATTGAGATCAAACGCATGTCCATTCGTGATACCTTGGATGAGTATGCCAGAGAGTCAAATGAGCAACAGAAAGCTATTTTGAAGCAAACTCTTGACTTACATTATAAAGAGTTGGATGAACATATAATCAAAGAAAGGGAATGGTGCTATGAGGGCCGCAACCTTGCTCAGAGAATTGAGGATCCAAAGAAACTTATGGGCAATGCTGAAAATTTATTAGCCAAAACTAGCTGCAAGGTACATCAATTCTTTGAGTCCACTTCAGTCACTAATATGGATGTTGCAATGGATGTGTTGTTTGACATCCGAAGCATGAAGCAATGTGCAAAATATGCTGTTGATATCTGGTACAATTTTAAGGAAGCCATGCAAGTCGGAGCTAAGAATGTATATGAAGTATGTTTGAGGGATGTGCCCACTGTACCTACATTGAGTTAG___CTTGCCGGACAAGGTATAGCATCTCTCACCCTGCCAGAAGTTTCAGTGTCCAGATACTACATGGATTTAGTTATAGTTTCAGACTCAGCAAACTGTAGCAGACCATGTTGATTCTCTTCAGTCTAATCCACAGCAACAAGTTTTCCAGACGTGCCAGGTTGTGA

Fln Alignment:

sp_v1.1_unigene3646___MDVLFDIRSMKQCAKYAVDIWYNFKEAMQVGAKNVYEVCLRDVPTVPTLS
D5ACD7______________MDVLFDIRSMKQCAKDAVDIWYNFKEAMQVGAKNVYEVCLRDVSTVPILS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
599	66		33		0.997452
600			33	66	0.997452
601			33	66	0.997452
684	33		66		0.997452
1139		9		90	0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain